CsaV3_6G002650 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G002650
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 1847324 .. 1848005 (-)
RNA-Seq Expression	CsaV3_6G002650
Synteny	CsaV3_6G002650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCCTTTTAATTATTCACTATAAAAACATCATTCTCATCTCCTTTCTCCTTAAACCAACACTCAAACATCCAAATTCAATCCTCCATCTAATTACTTCATCTACACCATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAAATAATTTGTCTATATTTTCATTTTCTTTTGTATGTTATTAGTTCATTGAAAATGTATTTTTATAATTTTTATCGAGCTTAATTATGGAACTGTTAAGCTATTTTTAAATGAAGTTCTTAAGCCTCCTTCTATATTACTTGTATTATTTTCTACCTAAAAATAGTTGCTATTAAACATAAAACAAGCCGATTAGAGAGAAAATGTATATAGTAACGACTTATTGGTAATATACATTGAAGTTGTTTATCAATATGCATGTGGTTTATAAGTGATAAAC

mRNA sequence

ATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Coding sequence (CDS)

ATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Protein sequence

MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV*

Homology

[Close]

BLAST of CsaV3_6G002650 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsaV3_6G002650 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.4e-42
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKKSHSSFSIFSFFKS+RGRKGD+ +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CsaV3_6G002650 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsaV3_6G002650 vs. NCBI nr
Match: KGN45868.1 (hypothetical protein Csa_004803 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsaV3_6G002650 vs. NCBI nr
Match: KAE8646586.1 (hypothetical protein Csa_023592, partial [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 23 RGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFES 82
          RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AEPGIDRKAKDYIDRIYRNRVFES
Sbjct: 1  RGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFES 60

Query: 83 ERQTVTISPNGTKSNV 99
          ERQTVTISPNGTKSNV
Sbjct: 61 ERQTVTISPNGTKSNV 76

[Close]

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.2e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.4e-49
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKKSHSSFSIFSFFKS+RGRKGD+ +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsaV3_6G002650 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG  +  S   FS+FSFFK++R  +    +  G+W D+   + K   SDEDK  +W+AE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CsaV3_6G002650 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 25 RKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESER 84
          R   H     A  D++  + K W SDEDK  +W+AEPGIDRKA  +I + + +RV ESER
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESER 64

Query: 85 QTV 88
          QT+
Sbjct: 65 QTL 66

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	1.7e-50	100.00	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAA0035003.1	8.4e-42	87.63	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	2.4e-41	86.60	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45868.1	2.1e-37	83.70	hypothetical protein Csa_004803 [Cucumis sativus]	[more]
KAE8646586.1	1.1e-36	97.37	hypothetical protein Csa_023592, partial [Cucumis sativus]	[more]

BLAST of CsaV3_6G002650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	8.2e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	3.4e-49	96.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	4.1e-42	87.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	1.2e-41	86.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8V3	1.0e-37	83.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of CsaV3_6G002650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.3e-13	45.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	3.4e-09	47.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..48
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..88
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002650.1	CsaV3_6G002650.1	mRNA