Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCCTTTTAATTATTCACTATAAAAACATCATTCTCATCTCCTTTCTCCTTAAACCAACACTCAAACATCCAAATTCAATCCTCCATCTAATTACTTCATCTACACCATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAAATAATTTGTCTATATTTTCATTTTCTTTTGTATGTTATTAGTTCATTGAAAATGTATTTTTATAATTTTTATCGAGCTTAATTATGGAACTGTTAAGCTATTTTTAAATGAAGTTCTTAAGCCTCCTTCTATATTACTTGTATTATTTTCTACCTAAAAATAGTTGCTATTAAACATAAAACAAGCCGATTAGAGAGAAAATGTATATAGTAACGACTTATTGGTAATATACATTGAAGTTGTTTATCAATATGCATGTGGTTTATAAGTGATAAAC
mRNA sequence
ATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA
Coding sequence (CDS)
ATGGGTGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA
Protein sequence
MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV*
Homology
BLAST of CsaV3_6G002650 vs. NCBI nr
Match:
KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])
HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of CsaV3_6G002650 vs. NCBI nr
Match:
KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 180.3 bits (456), Expect = 8.4e-42
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0
Query: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
G NRQKKSHSSFSIFSFFKS+RGRKGD+ +H G+ DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3 GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99
BLAST of CsaV3_6G002650 vs. NCBI nr
Match:
KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])
HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0
Query: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+ DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3 GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99
BLAST of CsaV3_6G002650 vs. NCBI nr
Match:
KGN45868.1 (hypothetical protein Csa_004803 [Cucumis sativus])
HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGG++ KKSHSSFS FSF KSK RKGDHYDHGG+W DE RS KVWPSDEDKAHHW+AE
Sbjct: 1 MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
PGIDRKAKDYIDRIYRNRVFESERQTVTI N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92
BLAST of CsaV3_6G002650 vs. NCBI nr
Match:
KAE8646586.1 (hypothetical protein Csa_023592, partial [Cucumis sativus])
HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0
Query: 23 RGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFES 82
RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AEPGIDRKAKDYIDRIYRNRVFES
Sbjct: 1 RGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFES 60
Query: 83 ERQTVTISPNGTKSNV 99
ERQTVTISPNGTKSNV
Sbjct: 61 ERQTVTISPNGTKSNV 76
BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match:
A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 8.2e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match:
A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)
HSP 1 Score: 203.8 bits (517), Expect = 3.4e-49
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1 MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match:
A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0
Query: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
G NRQKKSHSSFSIFSFFKS+RGRKGD+ +H G+ DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3 GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99
BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match:
A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0
Query: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+ DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3 GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99
BLAST of CsaV3_6G002650 vs. ExPASy TrEMBL
Match:
A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGG++ KKSHSSFS FSF KSK RKGDHYDHGG+W DE RS KVWPSDEDKAHHW+AE
Sbjct: 1 MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
PGIDRKAKDYIDRIYRNRVFESERQTVTI N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92
BLAST of CsaV3_6G002650 vs. TAIR 10
Match:
AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 1 MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
MGG + S FS+FSFFK++R + + G+W D+ + K SDEDK +W+AE
Sbjct: 1 MGGKNRSHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60
Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
PGIDRKA +I + + RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83
BLAST of CsaV3_6G002650 vs. TAIR 10
Match:
AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0
Query: 25 RKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESER 84
R H A D++ + K W SDEDK +W+AEPGIDRKA +I + + +RV ESER
Sbjct: 5 RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESER 64
Query: 85 QTV 88
QT+
Sbjct: 65 QTL 66
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN45870.1 | 1.7e-50 | 100.00 | hypothetical protein Csa_004960 [Cucumis sativus] | [more] |
KAA0035003.1 | 8.4e-42 | 87.63 | hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... | [more] |
KGN45869.1 | 2.4e-41 | 86.60 | hypothetical protein Csa_005516 [Cucumis sativus] | [more] |
KGN45868.1 | 2.1e-37 | 83.70 | hypothetical protein Csa_004803 [Cucumis sativus] | [more] |
KAE8646586.1 | 1.1e-36 | 97.37 | hypothetical protein Csa_023592, partial [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K7Y2 | 8.2e-51 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1 | [more] |
A0A0A0KBW1 | 3.4e-49 | 96.94 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1 | [more] |
A0A5A7SWT9 | 4.1e-42 | 87.63 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KAK6 | 1.2e-41 | 86.60 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1 | [more] |
A0A0A0K8V3 | 1.0e-37 | 83.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G05858.1 | 1.3e-13 | 45.45 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT5G26620.1 | 3.4e-09 | 47.62 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |