CsaV3_6G001560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G001560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-CH-type domain-containing protein
Location	chr6: 1019769 .. 1023242 (-)
RNA-Seq Expression	CsaV3_6G001560
Synteny	CsaV3_6G001560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATACATTGATCGACATAATCTGAACTAAGGTCTGGTAGGGGTAGGGGTATTTGTATTGTTTTGGTTGTGGTTGGGAAAATGAAAGGTTGAATGAAATTTTCTTTGTTTTGTAAACAATTTGTGATGTAATTTTTGTGTCAAAAAAGATTTATATTTCCCTTCCAACAATGATTTGGATGATCACGTTTTCTACTTTTTCTTTTTGAGTGAAGAAAAAAGAAAAGGAAAAAGAAGAAGTTGAATGATGCTCTCTGCATTATGCAGTCCAAAAATTGTCTCCAAAATCTTTCGTCGTCTTCTTCCTCTCTGCAACAACTCTGTTTTTTGCTGCACATCGCCACTGACACCCCAACAAAGCCGCTGAAACAGGGGACACCCACCACTCTTTCTTCTTCTACTTCTCACTCCATTACTCATTAATCATCACACCCTAAATCAAGTTTTTTCCTTCATGGGTCTCCTTTCTCTCTCCCCCCATTCTTCCTTTTCGCCTCACATACCCATTACATGAGGATTCTCTTTCTGGGTCTTTGCGATGACGACCGTCCAAGCCTCCCACGTTGTCGCAATGGATGTAGAACAACACCAACAACGCCCTCGCACTGACTCCGATGATGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGATGGGGTGGCGGTGGCGGCGGCGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAAGGATTGCAGGATTTGTCATCTGAGTTTGGACGCTTCTAATCATGAATCTGGAATCCCTATTGAGCTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATGTAAGTTTTTTCAAATTGAATGACACCTAATGTTTCTTGCTTTCAAGTTCACTTCTTGTCTTCATTTACTTTTCAATTCCTTGGATATAATGATTGATACCACTATAAACATACCTGGAATCTGGAATACCAACCTTGTTTTCTTCGATTTAATCTTGTAGTTCAAATTTCCCTATTCCTCATGGTGTTTTTGTTTTTATTTTAGCGTTCCCTTTTCTCTTTTCTGACTACTCTTGAAGTTTGTCTTCTACTTAAAAGTTGTGGACCTGTGGTTGACTTCTGTTACTCTTGGTGTTTTAGTAATGTTAAAGAATTTGGGTTGTATTTGTGTTTGATCCTGTCAAGATAGCCTTCTTTGACTAAAAAGGACTAATTCCTGACCTTGTGTCTGCAAAACAGCTTAATCCAAATGCTAAAGAATTGAGACTATGTATTCATTTTTATTTTTGCTTCTGCCTTATGAAATAGTGGTGCCGTTATAAATCCTCGGCCTTTTTTAGGATCCACGTATTCGTTTCCTGTTAAAGATCAAAGCCAAAACACAATGTGTTTCTTTGTAAAAGAAGTTGGATTTTGCATTGGACGATATGAGACCGATTGGAGGTGTTTCTTGATGTAGAACTTTTGCCTTCTGTCTTGTAGAAAAGGCTTATTTCTTTAGCCTATAATTTGCTTGCTTTAGTTGGATGTAATATTGATTAGAGCACATTTTCTTAGCAGAGTTCAAATGTTTGAATATTCTTTTTTCAACATATTGTGTCCTTTTTGTTTTTGCCTTTCTGGTCAACTTTAGTGTGAAGTTTGAAACAGTGGAAAAAAAATTCATAACCTTTGCTGCATATTCTTTATTACTTCATTGCATGATGTTGGTATCTACAAAAATATATGGAATCAACATTTATTCCTAAAAAGACCAATCAGTGAGATTCTTTGTTTCTTTTTAACCATTCCTTTATCAGTTCGAACTGTCCTACAGAAGATGTTACAAAAATTAATACAGACATTATTTATGATACAATATAGAAAGGTTTTGTTTTGAGTTTTAAACATCTTTCTTCGAGGTTTAACCTATATTTACATCTCCACAAGTTCCATGATCGGCATAGCTGTCAATATTCATGTCATCCCTTGTTCAGAATGATTTATACTTGTATGCACAAAGATAGAGTTTCAGTTTGAGGTTGATTGTTATTTCATTTCACCACTCTCAAATCACCATTCAAGACTGTGAAGCTAGTTTGGCTGTCGAATAATTCACGGTATCGAACATGTGAGATACAATATTTGTATGTGATTATTTCCTCATTCATTATACTGCAACCTGGAGTAAGTATGGCTATATGAAACCTCTTTCCATTTTCAAGTTTGTTGATTGATTAAAGCTTATTACATACAGATGACGGTCAAAAGGGTGTGTAGACTGTAAGAAGCTAAAAAACTATCTTCACTCTATCTTCTGCATAAGTTGAACATATTTTTCCCATGATGAATACAGTGAGCATATTGAAAGAATTGAATCGTAATAGTTTGGTTTGTGAAGAACTTTATTCCATTTGACCCTGCTATGAACCATATATAGTTTGGCCAGGAAAACTTTTCACTATTAGAGAGTGCTGTATAACTAGAAAACTTGTTTGTGATTCATGTTATTCTATTAGCTGACTATGGTGTATAAAGAAATTTGAAAGTTATGTTATCTGGAATATAAGACGAGGGAAAAAGCAAATACTGTTCAAACTTGGAAAAGCTCAACAACCTTGCACTGATCCATTTGTAATTTGTTACAGCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCAACAGAGCAACGCAATGAACCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTATCGTGATGCCACCACACTCTACAGAGGCACGAAACTTCTGGCAAGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAATTATGGAAAAGAAAACTATATTTGAAAAGTAGCATCAAAGGCTTGTCGAAAATCTTCATCGTCCTCTCTTCATTCTGCAATGCCTTCACTGAAACAAGCTCGAAAGATCAACTAGATTGCACGGTTACCGGCTTGGGATTGTGATTACAAATATTCTGTTAATATATATTAGTATTAGAGAACCTTGGAGGAAGAGTTTGGCTTTTGTAACATGTAAGATGTATAATGAAATTGTTTGTTAGTTTATATTGTATTATTGGGCTCAGCCTAGCTGGATTGGCCATCTCAATTGTTCGTGCTGTTTGTCTCTTGTCGTTTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATAACAACAAAATCGGATTTGGGTCTCCAAATAATGTATGTTAAGAAAAAAAGGCAGAAATGTTTGATCAAATCAAATATCATATAAAATATTTTGCATCTAAAGCAACCTCCATTGGTTGATATCTTCAAAGCC

mRNA sequence

ATGACGACCGTCCAAGCCTCCCACGTTGTCGCAATGGATGTAGAACAACACCAACAACGCCCTCGCACTGACTCCGATGATGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGATGGGGTGGCGGTGGCGGCGGCGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAAGGATTGCAGGATTTGTCATCTGAGTTTGGACGCTTCTAATCATGAATCTGGAATCCCTATTGAGCTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCAACAGAGCAACGCAATGAACCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTATCGTGATGCCACCACACTCTACAGAGGCACGAAACTTCTGGCAAGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA

Coding sequence (CDS)

ATGACGACCGTCCAAGCCTCCCACGTTGTCGCAATGGATGTAGAACAACACCAACAACGCCCTCGCACTGACTCCGATGATGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGATGGGGTGGCGGTGGCGGCGGCGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAAGGATTGCAGGATTTGTCATCTGAGTTTGGACGCTTCTAATCATGAATCTGGAATCCCTATTGAGCTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCAACAGAGCAACGCAATGAACCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTATCGTGATGCCACCACACTCTACAGAGGCACGAAACTTCTGGCAAGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA

Protein sequence

MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS*

Homology

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BLAST of CsaV3_6G001560 vs. NCBI nr
Match: XP_004138437.1 (uncharacterized protein LOC101207404 [Cucumis sativus] >KGN45763.1 hypothetical protein Csa_004857 [Cucumis sativus])

HSP 1 Score: 435.6 bits (1119), Expect = 2.4e-118
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS
Sbjct: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

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BLAST of CsaV3_6G001560 vs. NCBI nr
Match: XP_008441426.1 (PREDICTED: uncharacterized protein LOC103485546 [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 4.3e-115
Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAM+VEQHQQ PRTDSD+VRRCSVHSRADILEE+GVAVA AAA EKRRGSS
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIE+DCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

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BLAST of CsaV3_6G001560 vs. NCBI nr
Match: KAA0041505.1 (E3 ubiquitin-protein ligase MARCH8 [Cucumis melo var. makuwa] >TYK24378.1 E3 ubiquitin-protein ligase MARCH8 [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 5.6e-99
Identity = 183/207 (88.41%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAM+VEQHQQ PRTDSD+VRRCSVHSRADILEE+GVAVA AAA EKRRGSS
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIE+DCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISW 208
           EARNFWQGH      ++ +    ++S+
Sbjct: 181 EARNFWQGHSLAGLAISIVRAVCLLSF 207

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BLAST of CsaV3_6G001560 vs. NCBI nr
Match: XP_038884403.1 (uncharacterized protein LOC120075258 [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.8e-96
Identity = 190/229 (82.97%), Postives = 194/229 (84.72%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVE----QHQQRPR------TD----SDDVRRCSVHSRADILEEDGVA 60
           MTT+Q SHV  MDVE    Q QQRPR      TD    SDDVRRCSV SRADI+EE    
Sbjct: 1   MTTIQNSHVGTMDVEQQQQQQQQRPRRVSAAATDSSPASDDVRRCSVQSRADIMEE---- 60

Query: 61  VAAAAAVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPI 120
                A EKRRGSSVSECSVEMDLECGLAEIKVHLAKIE+D RICHLSLDASNHESGIPI
Sbjct: 61  ----VAAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDFRICHLSLDASNHESGIPI 120

Query: 121 ELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATT 180
           ELGCSCKDDLAAAHK CAEAWFKIKGDITCEICGSIAHNVTGTYE DSTEQRNE NEATT
Sbjct: 121 ELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEPDSTEQRNESNEATT 180

Query: 181 ATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           AT TAA+VMP HSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 ATTTAAVVMPLHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 221

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BLAST of CsaV3_6G001560 vs. NCBI nr
Match: KAG6602635.1 (hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.0 bits (894), Expect = 3.0e-92
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTD---------SDDVRRCSVHSRADILEEDGVAVAAAA 60
           M+T++ +HVVAM+ E+ ++  R           SDDVRRCSV S A+I       V AAA
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEI-------VGAAA 60

Query: 61  AVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCS 120
           AVEKRRGSSVSECSVEMDLECGL EIKVHLAK+E+DCRICHLSLDA+NHESGIPIELGCS
Sbjct: 61  AVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCS 120

Query: 121 CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATA 180
           CKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVTGT EADSTEQ NE N+ TTAT  A
Sbjct: 121 CKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTGTCEADSTEQCNESNDGTTATTVA 180

Query: 181 AIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           A+V+PPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 AVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 217

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BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL
Match: A0A0A0K8G0 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G009420 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS
Sbjct: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL
Match: A0A1S3B429 (uncharacterized protein LOC103485546 OS=Cucumis melo OX=3656 GN=LOC103485546 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.1e-115
Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAM+VEQHQQ PRTDSD+VRRCSVHSRADILEE+GVAVA AAA EKRRGSS
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIE+DCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

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BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL
Match: A0A5A7TJA4 (E3 ubiquitin-protein ligase MARCH8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001630 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.7e-99
Identity = 183/207 (88.41%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSS 60
           MTTVQASHVVAM+VEQHQQ PRTDSD+VRRCSVHSRADILEE+GVAVA AAA EKRRGSS
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIE+DCRICHLSLDASNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 EARNFWQGHRFLNFLLACMVFAFVISW 208
           EARNFWQGH      ++ +    ++S+
Sbjct: 181 EARNFWQGHSLAGLAISIVRAVCLLSF 207

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BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL
Match: A0A6J1GZN3 (uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC111458938 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.5e-91
Identity = 172/224 (76.79%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPRTD---------SDDVRRCSVHSRADILEEDGVAVAAAA 60
           M+T++ +HVVAM+ E+ ++  R           SDDVRRCSV S A+I+         AA
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIV--------GAA 60

Query: 61  AVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCS 120
           AVEKRRGSSVSECSVEMDLECGL EIKVHLAK+E+DCRICHLSLDA+NHESGIPIELGCS
Sbjct: 61  AVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCS 120

Query: 121 CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATA 180
           CKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVT T EADSTEQ NE N+ TTAT  A
Sbjct: 121 CKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAA 180

Query: 181 AIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           A+V+PPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 AVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216

[Close]

BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL
Match: A0A6J1JQX9 (uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.1e-91
Identity = 174/224 (77.68%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 1   MTTVQASHVVAMDVEQHQQRPR-----TD----SDDVRRCSVHSRADILEEDGVAVAAAA 60
           M+T+Q +HVVAM+ EQ ++  R     TD    SDDVRRCSV S A+I+          A
Sbjct: 1   MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIV---------GA 60

Query: 61  AVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCS 120
           AVEKRRGSSVSECSVEMDLECGL EIKVHLAK+E+DCRICHLSLDA+NHESGIPIELGCS
Sbjct: 61  AVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCS 120

Query: 121 CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATA 180
           CKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVT T EADSTEQ NE N+ TTAT  A
Sbjct: 121 CKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAA 180

Query: 181 AIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
           A+V+PPHSTE RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 AVVVPPHSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of CsaV3_6G001560 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-58
Identity = 113/181 (62.43%), Postives = 130/181 (71.82%), Query Frame = 0


Query: 43  DGVAVAAAAAVEK--------RRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLS 102
           DG    ++ AVEK         R S+ S CSVE+DLE GL E  VHL++ E+DCRICH+S
Sbjct: 26  DGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDCRICHMS 85

Query: 103 LDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADS 162
           LDA+N ESG+PIELGCSCK DLAAAHKHCAE WFKIKG+  CE+CGSIA NV G+ E +S
Sbjct: 86  LDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVES 145

Query: 163 TEQRNEPNEATTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIP 216
            E RNE N     T   +    P   E R+FWQGHRFLNFLLACMVFAFVISWLFHF +P
Sbjct: 146 EESRNEANGVENLTLRTS---GPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVP 203

[Close]

BLAST of CsaV3_6G001560 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 85  EKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 144
           EKDCRICHL L++S HE G P+ LGCSCKDDL   HK CA+ WFKIKG+ TCEIC SIA 
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 145 NVTGTYEADST--EQRNEPNEATTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFA 204
           N    ++ D+   +   E N           ++    ++ R   +G+RFLNFLL CMV A
Sbjct: 135 NF---FKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCA 194

Query: 205 FVISWLFHFKIPS 216
           FVISW FHF +PS
Sbjct: 195 FVISWFFHFNLPS 204

[Close]

BLAST of CsaV3_6G001560 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-32
Identity = 71/133 (53.38%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 85  EKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 144
           EKDCRICHL ++ S    G  IELGCSCKDDLA AH+ CAE WFKIKGD TCEIC S+A 
Sbjct: 81  EKDCRICHLGVETS---GGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 145 NVTGTYE--ADSTEQRNEPNEATTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFA 204
           NV G  E    + E+R   N   TA           +T   N WQ  R +N +LACMVF 
Sbjct: 141 NVGGANEMVGSTMEERELRNGEETAAGEGG-----GATVVENRWQPQRVVNLVLACMVFG 200

Query: 205 FVISWLFHFKIPS 216
           F ISW+FHF + S
Sbjct: 201 FFISWIFHFHVSS 205

[Close]

BLAST of CsaV3_6G001560 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29
Identity = 69/159 (43.40%), Postives = 85/159 (53.46%), Query Frame = 0


Query: 86  KDCRICHLSLDASNHES-------------------------------GIPIELGCSCKD 145
           +DCRICHL L+ +                                   G+P++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 146 DLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIV 205
           DL  AH  CAE WFKIKG++TCEICG++A NV G       EQ N  + A+T +  AA  
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG-------EQSNPESTASTHSQAAA-G 198

Query: 206 MPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKI 214
                TE R  W G   +NFLLA MVFAFV+SWLFHFK+
Sbjct: 199 QSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of CsaV3_6G001560 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-16
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 85  EKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 134
           EKDCRICHL L++S HE G P+ LGCSCKDDL   HK CA+ WFKIKG+
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGN 123

The following BLAST results are available for this feature:

BLAST of CsaV3_6G001560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138437.1	2.4e-118	100.00	uncharacterized protein LOC101207404 [Cucumis sativus] >KGN45763.1 hypothetical ...	[more]
XP_008441426.1	4.3e-115	96.74	PREDICTED: uncharacterized protein LOC103485546 [Cucumis melo]	[more]
KAA0041505.1	5.6e-99	88.41	E3 ubiquitin-protein ligase MARCH8 [Cucumis melo var. makuwa] >TYK24378.1 E3 ubi...	[more]
XP_038884403.1	5.8e-96	82.97	uncharacterized protein LOC120075258 [Benincasa hispida]	[more]
KAG6602635.1	3.0e-92	78.13	hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_6G001560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G001560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8G0	1.2e-118	100.00	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G00942...	[more]
A0A1S3B429	2.1e-115	96.74	uncharacterized protein LOC103485546 OS=Cucumis melo OX=3656 GN=LOC103485546 PE=...	[more]
A0A5A7TJA4	2.7e-99	88.41	E3 ubiquitin-protein ligase MARCH8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1GZN3	3.5e-91	76.79	uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1JQX9	6.1e-91	77.68	uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535...	[more]

BLAST of CsaV3_6G001560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	3.9e-58	62.43	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.1e-33	51.88	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	4.8e-32	53.38	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.2e-29	43.40	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.7e-16	69.39	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 87..140 e-value: 5.6E-17 score: 72.4
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 88..139 e-value: 8.2E-9 score: 35.5
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 80..146 score: 16.911161
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 76..149 e-value: 1.7E-13 score: 51.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 16..215
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 16..215
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 85..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G001560.1	CsaV3_6G001560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding