CsaV3_5G018950 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G018950
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 14423648 .. 14423964 (-)
RNA-Seq Expression	CsaV3_5G018950
Synteny	CsaV3_5G018950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGCCGTCTCCATCGCCGCAGCAGTCGTCCCGCGCGCCGATTTGCCGTCTCCATCGCCGGTTATGTCTCCGTCGAAGCCAAGGCCGCCGCGTGGACCAGTAACCGCCACGCTCCCCGCTCACAACCGCCGCTCCACCTGCTATCGACGTCGGCCGACTAGTTGCTGTAACCGTTCAGATTTGCTGTCTGTTCGCGACGGTTTCCATCCGTGAACGCCACAAGGGACACTTTAAAATTTTGCTTCCGCTTAGTGATTTATTGTATTATTTGTATTCGAACGTGAGACTGTTTAGAAATTTTGAGGTTGTAAAGTAT

mRNA sequence

CCAGCCGTCTCCATCGCCGCAGCAGTCGTCCCGCGCGCCGATTTGCCGTCTCCATCGCCGGTTATGTCTCCGTCGAAGCCAAGGCCGCCGCGTGGACCAGTAACCGCCACGCTCCCCGCTCACAACCGCCGCTCCACCTGCTATCGACGTCGGCCGACTAGTTGCTGTAACCGTTCAGATTTGCTGTCTGTTCGCGACGGTTTCCATCCGTGA

Coding sequence (CDS)

CCAGCCGTCTCCATCGCCGCAGCAGTCGTCCCGCGCGCCGATTTGCCGTCTCCATCGCCGGTTATGTCTCCGTCGAAGCCAAGGCCGCCGCGTGGACCAGTAACCGCCACGCTCCCCGCTCACAACCGCCGCTCCACCTGCTATCGACGTCGGCCGACTAGTTGCTGTAACCGTTCAGATTTGCTGTCTGTTCGCGACGGTTTCCATCCGTGA

Protein sequence

PAVSIAAAVVPRADLPSPSPVMSPSKPRPPRGPVTATLPAHNRRSTCYRRRPTSCCNRSDLLSVRDGFHP*

Homology

[Close]

BLAST of CsaV3_5G018950 vs. NCBI nr
Match: KAE8648322.1 (hypothetical protein Csa_004658, partial [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  PAVSIAAAVVPRADLPSPSPVMSPSKPRPPRGPVTATLPAHNRRSTCYRRRPTSCCNRSD 60
          PAVSIAAAVVPRADLPSPSPVMSPSKPRPPRGPVTATLPAHNRRSTCYRRRPTSCCNRSD
Sbjct: 1  PAVSIAAAVVPRADLPSPSPVMSPSKPRPPRGPVTATLPAHNRRSTCYRRRPTSCCNRSD 60

Query: 61 LLSVRDGFHP 71
          LLSVRDGFHP
Sbjct: 61 LLSVRDGFHP 70

[Close]

BLAST of CsaV3_5G018950 vs. NCBI nr
Match: XP_031737577.1 (uncharacterized protein LOC116402462 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-05
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 7   AAVVPRADLPSPSPVMSPSKPRPPRGPVTATLPAHNRR 45
           AAVVPRADLPSPSPV+S SKP PP  PVTAT  AHNRR
Sbjct: 64  AAVVPRADLPSPSPVLSSSKPEPPCEPVTATSAAHNRR 101

The following BLAST results are available for this feature:

BLAST of CsaV3_5G018950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648322.1	2.4e-30	100.00	hypothetical protein Csa_004658, partial [Cucumis sativus]	[more]
XP_031737577.1	7.7e-05	81.58	uncharacterized protein LOC116402462 [Cucumis sativus]	[more]

BLAST of CsaV3_5G018950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G018950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G018950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G018950.1	CsaV3_5G018950.1	mRNA