CsaV3_5G017540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G017540
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionSqualene monooxygenase
Locationchr5: 14070750 .. 14071485 (+)
RNA-Seq ExpressionCsaV3_5G017540
SyntenyCsaV3_5G017540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATATTTACCTTTCCTTTGGGGCATTACAAACACTTACACCGTCTACCGTCAACTAAGTACCAAATCCTTCACTTTTGATCGTTCGTCGCCTGCTGTCCATTGTGTACCAGAACCTAGCAACACTTCCACCATTCGACCGTTTTGTTGGTGCCTTTATGTTATCGTTGCTCAATGGTATGCTTTTCTTTGATCTGGGCTAAAATCTCATGGCAACAACAAGCAAGATGACCCCAACAAGAAGGACAAGAAACAACACCCTTCATCGTCGTATTGGCGATCTCTTTGAGGTTGTTGCATCTGTACTCAGAAAAAATGGTGGATCAATGCGCGTTAGGATGGATCTTGGCCTCTCTTCTCAAAGCTTTGGCTTTATATTTATTGTTCGGCAAGAAAAACTGTGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGGTAATCTTATCCTTCTGTTCTCCAACATTTTTCTCTAACTAAGTGCTCTCGCTTAGTTTCGTGTTAAACAACAGAGGATTTTTGAAAGTTTCACTTGAGAAATGCTAATGTGGAGAATCAGATTCGAGTGATTAAAAATTGTAGAAACAAAATTTCGTTTTGACTTGCTTAGGTATTGTATGATTTATG

mRNA sequence

ATGGTGGATCAATGCGCGTTAGGATGGATCTTGGCCTCTCTTCTCAAAGCTTTGGCTTTATATTTATTGTTCGGCAAGAAAAACTGTGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGGTAA

Coding sequence (CDS)

ATGGTGGATCAATGCGCGTTAGGATGGATCTTGGCCTCTCTTCTCAAAGCTTTGGCTTTATATTTATTGTTCGGCAAGAAAAACTGTGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGGTAA

Protein sequence

MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVLPILSPR*
Homology
[Close]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match: KAE8648305.1 (hypothetical protein Csa_017782 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII
Sbjct: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60

Query: 61 IVEVGVANPVLPILSPR 78
          IVEVGVANPVLPILSPR
Sbjct: 61 IVEVGVANPVLPILSPR 77

[Close]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match: XP_004141303.1 (squalene monooxygenase SE1 [Cucumis sativus] >KGN55303.1 hypothetical protein Csa_012944 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 4.5e-22
Identity = 59/71 (83.10%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS+L A ALYLLFGKKNCGVSNE R ESLKNIATT+GECKSSNSD DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match: XP_016901349.1 (PREDICTED: squalene monooxygenase-like [Cucumis melo] >KAA0064475.1 squalene monooxygenase-like [Cucumis melo var. makuwa] >TYK20113.1 squalene monooxygenase-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS+L A ALYLLFGKKNCGV NE R ESLKNIATT+GECKSSNSD DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match: XP_023536393.1 (squalene monooxygenase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS++ A ALY LFGKKNCG SNE R ESLKNIATT+GECK SNSD DII
Sbjct: 1  MVDQCALGWILASVIGAAALYFLFGKKNCGASNERRRESLKNIATTNGECKPSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match: KAG7024326.1 (hypothetical protein SDJN02_13140 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          M+DQCALGWILAS++ A ALY LFGKKNCG SNE R ESLKNIATT+GECK SNSD DII
Sbjct: 1  MMDQCALGWILASVMGAAALYFLFGKKNCGASNERRRESLKNIATTNGECKPSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match: A0A0A0L0L0 (Squalene monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_4G645290 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 59/71 (83.10%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS+L A ALYLLFGKKNCGVSNE R ESLKNIATT+GECKSSNSD DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match: A0A5D3D983 (Squalene monooxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002380 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS+L A ALYLLFGKKNCGV NE R ESLKNIATT+GECKSSNSD DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match: A0A1S4DZE1 (Squalene monooxygenase OS=Cucumis melo OX=3656 GN=LOC103493632 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          MVDQCALGWILAS+L A ALYLLFGKKNCGV NE R ESLKNIATT+GECKSSNSD DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

[Close]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match: A0A0A0KJL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G116170 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 20 LYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVLPILSPR 78
          L+ +   KNCGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVLPILSPR
Sbjct: 25 LFEVVASKNCGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVLPILSPR 82

[Close]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match: A0A6J1FBI5 (Squalene monooxygenase OS=Cucurbita moschata OX=3662 GN=LOC111442598 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 1  MVDQCALGWILASLLKALALYLLFGKKNCGVSNEWRCESLKNIATTDGECKSSNSDSDII 60
          M+DQCALGWILAS++ A ALY LFGKKNCG SNE R ESLKNIATT+GECK SNSD DII
Sbjct: 1  MMDQCALGWILASVVGAAALYFLFGKKNCGASNERRRESLKNIATTNGECKPSNSDGDII 60

Query: 61 IVEVGVANPVL 72
          IV  GVA   L
Sbjct: 61 IVGAGVAGSAL 71

The following BLAST results are available for this feature:
BLAST of CsaV3_5G017540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648305.14.6e-35100.00hypothetical protein Csa_017782 [Cucumis sativus][more]
XP_004141303.14.5e-2283.10squalene monooxygenase SE1 [Cucumis sativus] >KGN55303.1 hypothetical protein Cs... [more]
XP_016901349.12.2e-2181.69PREDICTED: squalene monooxygenase-like [Cucumis melo] >KAA0064475.1 squalene mon... [more]
XP_023536393.11.9e-2077.46squalene monooxygenase-like [Cucurbita pepo subsp. pepo][more]
KAG7024326.14.2e-2076.06hypothetical protein SDJN02_13140 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CsaV3_5G017540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0L02.2e-2283.10Squalene monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_4G645290 PE=3 SV=1[more]
A0A5D3D9831.1e-2181.69Squalene monooxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S4DZE11.1e-2181.69Squalene monooxygenase OS=Cucumis melo OX=3656 GN=LOC103493632 PE=3 SV=1[more]
A0A0A0KJL36.9e-2189.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G116170 PE=4 SV=1[more]
A0A6J1FBI52.6e-2076.06Squalene monooxygenase OS=Cucurbita moschata OX=3662 GN=LOC111442598 PE=3 SV=1[more]
BLAST of CsaV3_5G017540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017540.1CsaV3_5G017540.1mRNA