CsaV3_5G015500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G015500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	calmodulin-like
Location	chr5: 12888903 .. 12890402 (+)
RNA-Seq Expression	CsaV3_5G015500
Synteny	CsaV3_5G015500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAACAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAACAAACGATGAATGTTCTTAGCTATTTTCACGTGCATTTTATGTGCTGAGGTAATATTTGAAAGTTGTAAAAGTATAAGTAAAATAAAGAATTCGTCTACCATTTTTATTTTACTTGCATTGCTGGTTTGCTTCATAGTTTTGTATTAATTAATAATGTAGCAAAACAATATAATATGATGTGTCCACCTGATTCAATGTTTATATGTTATATGTTACTGAGGGGTTGTAATCAAAACATCTTTTAAATCCAAGGGAAAGATAGCAAAACAGTAGTGTCCTTCCATTCCAATTCAAAGGGTATTCACATTATTTATAAGTCATACCAACAAATATATATAATAAGAAAAAAGGATATATCTATAACAAGTACTGCCTATCAACAACCATTTACCTAAAGCAAATTGAATGATATATAACAAATTTTAACAAAATTGTTAAAATAGTTACAACCAACTCAAAAATACGAAAATATTATTTTATTCCACATAATAGAAAGCACCTGACTTGCACATGGAACTCAATTTTTGTCATCCCTCTATTTCTCTTGGTATGTATGCAGTGCTAACATTTGAAATAACTATCTTCTAGATTTCATATCATTTTAATAATATGGTGTCATATTCCTTTTCAATTCACTTACTTAGACCGAGAGAGAATGCAACCAATAGGTGAAGTGTCAATATCCCTTAGTTTTGTGGGGGTGACAATTCGATGCAACAACTTCTCAACTCAAGACTTAAACACACTTAAATATTTCTACTTTTCCGTTTAGTAGTTAGTTAAGTTAATTGCTAATTAAATCTAACCAACACAATGGAAAATAATGAAAACAGGAACTCCAAACTTTTATTAACTTCAAATGTGTAATAAAAAGCAATGAACTATCACAGACTATAATTGAACACAAAGTGAACACCACTACACTTTTTACAGACTGACTATGACTTCCAACTTACAATTCAGAGAATTACTGGATAG

mRNA sequence

ATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGACTGACTATGACTTCCAACTTACAATTCAGAGAATTACTGGATAG

Coding sequence (CDS)

ATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGACTGACTATGACTTCCAACTTACAATTCAGAGAATTACTGGATAG

Protein sequence

MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMTDYDFQLTIQRITG*

Homology

[Close]

BLAST of CsaV3_5G015500 vs. NCBI nr
Match: KAE8648235.1 (hypothetical protein Csa_018526 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYDFQLTIQRITG 161
           LNLREVTKAFAFLGTILPLYKAYHGMTDYDFQLTIQRITG
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYDFQLTIQRITG 160

[Close]

BLAST of CsaV3_5G015500 vs. NCBI nr
Match: KAE8648234.1 (hypothetical protein Csa_018399 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 7.0e-38
Identity = 96/146 (65.75%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 11  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATK-KLKP-N 70

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 71  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 130

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGM 147
           LN+REVTKAFA LG+I P  KAYHGM
Sbjct: 131 LNIREVTKAFALLGSIFPFNKAYHGM 153

[Close]

BLAST of CsaV3_5G015500 vs. NCBI nr
Match: XP_022930012.1 (calmodulin-2/4-like [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 8.6e-28
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ S AKYEAS+++KK   N + V LKAFNGI  AST++NN Q+M  EI+    N
Sbjct: 1   MFIPKLQASMAKYEASEMIKKSTRNGDNVQLKAFNGIARASTQVNN-QSMVPEIL--RDN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             V    +SN +                     +KASNMQFSREQ+KEIF+YHDSD DGF
Sbjct: 61  KNVGPKFSSNTH---------------------LKASNMQFSREQMKEIFRYHDSDKDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN+RE+TKAFAFLG+I+P  KA +GMT  D
Sbjct: 121 LNIRELTKAFAFLGSIIPFEKASYGMTYAD 126

[Close]

BLAST of CsaV3_5G015500 vs. NCBI nr
Match: XP_023530739.1 (calmodulin-2/4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-27
Identity = 77/150 (51.33%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ S AKYEAS+++KK+  N + V LKAFNGI  AST++NN Q M  EI+    N
Sbjct: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVQLKAFNGIARASTQVNN-QGMVPEIL--RDN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             V    +SN +                     +KASNMQFSRE++KEIF+YHDSD DGF
Sbjct: 61  KNVGPKFSSNTH---------------------LKASNMQFSREKMKEIFRYHDSDKDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN+RE+TKAFAFLG+I+P  KA +GMT  D
Sbjct: 121 LNIRELTKAFAFLGSIIPFEKASYGMTYAD 126

[Close]

BLAST of CsaV3_5G015500 vs. NCBI nr
Match: KAE8648233.1 (hypothetical protein Csa_018371 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-27
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70
           A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+  VAH L S 
Sbjct: 2   AMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLK--ILKPSD-GVAHKLRSE 61

Query: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130
           A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGFLN  E+TKAF
Sbjct: 62  AHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAF 121

Query: 131 AFLGTILPLYKAYHGMTDYD 151
           AFLG++ P YKA +GM   D
Sbjct: 122 AFLGSMFPFYKACYGMVYAD 136

[Close]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL
Match: A0A0A0KIY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.7e-75
Identity = 147/150 (98.00%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LNLREVTKAFAFLGTILPLYKAYHGM   D
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYAD 150

[Close]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL
Match: A0A0A0KLF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 97/150 (64.67%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATK-KLKP-N 87

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 88  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 147

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN+REVTKAFA LG+I P  KAYHGM   D
Sbjct: 148 LNIREVTKAFALLGSIFPFNKAYHGMVYAD 174

[Close]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL
Match: A0A0A0KMQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 9.0e-31
Identity = 81/150 (54.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLK--ILKPSD 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L S A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGF
Sbjct: 61  -GVAHKLRSEAHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN  E+TKAFAFLG++ P YKA +GM   D
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYAD 145

[Close]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL
Match: A0A6J1EP72 (calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-28
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ S AKYEAS+++KK   N + V LKAFNGI  AST++NN Q+M  EI+    N
Sbjct: 1   MFIPKLQASMAKYEASEMIKKSTRNGDNVQLKAFNGIARASTQVNN-QSMVPEIL--RDN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             V    +SN +                     +KASNMQFSREQ+KEIF+YHDSD DGF
Sbjct: 61  KNVGPKFSSNTH---------------------LKASNMQFSREQMKEIFRYHDSDKDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN+RE+TKAFAFLG+I+P  KA +GMT  D
Sbjct: 121 LNIRELTKAFAFLGSIIPFEKASYGMTYAD 126

[Close]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL
Match: A0A5A7VI66 (Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001550 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 74/150 (49.33%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEA   +K +E + + V +K FN +  +ST+I   Q +  +I+   S+
Sbjct: 1   MYISKLQASMAMYEARMFIKHYEKDGDAVQVKGFNDV-RSSTQI-GYQGIVPKIL--KSS 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+  A++ P++Q G GK + +    LDIK+SNM FSR+QIKEIF+YHD++NDGF
Sbjct: 61  DDVAHKLSLEAHIQPTQQTG-GKGKKSIARALDIKSSNMSFSRQQIKEIFRYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMTDYD 151
           LN+ E+TKAFAFLG++ P YKA +GM   D
Sbjct: 121 LNIVELTKAFAFLGSMFPFYKACYGMVYAD 145

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648235.1	1.1e-83	100.00	hypothetical protein Csa_018526 [Cucumis sativus]	[more]
KAE8648234.1	7.0e-38	65.75	hypothetical protein Csa_018399 [Cucumis sativus]	[more]
XP_022930012.1	8.6e-28	52.00	calmodulin-2/4-like [Cucurbita moschata]	[more]
XP_023530739.1	1.9e-27	51.33	calmodulin-2/4-like [Cucurbita pepo subsp. pepo]	[more]
KAE8648233.1	7.3e-27	52.86	hypothetical protein Csa_018371 [Cucumis sativus]	[more]

BLAST of CsaV3_5G015500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIY4	2.7e-75	98.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1	[more]
A0A0A0KLF3	2.0e-38	64.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1	[more]
A0A0A0KMQ1	9.0e-31	54.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1	[more]
A0A6J1EP72	4.2e-28	52.00	calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1	[more]
A0A5A7VI66	6.0e-27	49.33	Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CsaV3_5G015500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 68..158 e-value: 6.3E-6 score: 28.1
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 114..126
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 101..136 score: 12.114401
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 97..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015500.1	CsaV3_5G015500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding