CsaV3_5G014280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	S-protein homolog
Location	chr5: 11305374 .. 11305699 (+)
RNA-Seq Expression	CsaV3_5G014280
Synteny	CsaV3_5G014280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

mRNA sequence

ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

Coding sequence (CDS)

ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

Protein sequence

MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEIX

Homology

[Close]

BLAST of CsaV3_5G014280 vs. NCBI nr
Match: KAE8648173.1 (hypothetical protein Csa_018428 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60
           MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN
Sbjct: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60

Query: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
           MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI
Sbjct: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 108

[Close]

BLAST of CsaV3_5G014280 vs. NCBI nr
Match: KAE8648169.1 (hypothetical protein Csa_018483, partial [Cucumis sativus] >KAE8648171.1 hypothetical protein Csa_018506, partial [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60
           MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN
Sbjct: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60

Query: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
           MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI
Sbjct: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 108

[Close]

BLAST of CsaV3_5G014280 vs. NCBI nr
Match: KAE8648167.1 (hypothetical protein Csa_018435 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-32
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 7   MPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDS 66
           + LLLV+LLL     SMA KKKAK+K+  P L  PNNP+V FE+F VEIHNDL M++LDS
Sbjct: 5   LTLLLVILLLAPLRTSMA-KKKAKNKSPTPKLSVPNNPVVMFERFTVEIHNDLRMFILDS 64

Query: 67  RCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
            CYSKDD+ GLH+LFPDE+Q+WSFKGNW  TT+FHCRLEWE+
Sbjct: 65  HCYSKDDDLGLHILFPDEKQDWSFKGNWIATTSFHCRLEWEV 105

[Close]

BLAST of CsaV3_5G014280 vs. NCBI nr
Match: XP_022933678.1 (S-protein homolog 2-like [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-24
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MAFQRLMPLLLVLLLLTSFN------VSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVE 60
           MA +R  P+LL++L+L +F+       S    K  K K  KP    PNNP  +FE+F VE
Sbjct: 1   MAMRR--PMLLLVLVLIAFSHFSMLTTSKNNNKVPKPKKTKPKFLKPNNPNPAFERFTVE 60

Query: 61  IHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWE 108
           IHNDL M++LD+ C SKDD+ GLH+LFPDE+Q+WSF  NW  TT FHCRLEW+
Sbjct: 61  IHNDLRMFILDAHCSSKDDDLGLHILFPDEEQDWSFHDNWLGTTEFHCRLEWQ 111

[Close]

BLAST of CsaV3_5G014280 vs. NCBI nr
Match: XP_023546843.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-24
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 5   RLMPLLLVLLL---LTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNM 64
           R +PLLL+LLL   L S  +S+A KKKA++    P+ PDPN P ++  KF V I N L M
Sbjct: 8   RRLPLLLLLLLLLHLVSLTMSVASKKKAET---GPEQPDPNQPAIALRKFDVHIRNGLRM 67

Query: 65  YLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEW 107
           YLLDS C SKDD+ G+HV++PD++Q+WSF+GNW  +T FHC+LEW
Sbjct: 68  YLLDSHCCSKDDDLGVHVVYPDDEQSWSFRGNWLGSTNFHCKLEW 109

[Close]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL
Match: A0A0A0KIQ4 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G017790 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60
           MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN
Sbjct: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLN 60

Query: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
           MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI
Sbjct: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 108

[Close]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL
Match: A0A0A0KL79 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G016040 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.8e-30
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 26  KKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQ 85
           KKKAK+K+  P L  PNNP+V FE+F VEIHNDL M++LDS CYSKDD+ GLH+LFPDE+
Sbjct: 3   KKKAKNKSPTPKLSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDEK 62

Query: 86  QNWSFKGNWDDTTTFHCRLEWEI 109
           Q+WSFKGNW  TT+FHCRLEWE+
Sbjct: 63  QDWSFKGNWIATTSFHCRLEWEV 85

[Close]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL
Match: A0A6J1F5H5 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111441018 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MAFQRLMPLLLVLLLLTSFN------VSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVE 60
           MA +R  P+LL++L+L +F+       S    K  K K  KP    PNNP  +FE+F VE
Sbjct: 1   MAMRR--PMLLLVLVLIAFSHFSMLTTSKNNNKVPKPKKTKPKFLKPNNPNPAFERFTVE 60

Query: 61  IHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWE 108
           IHNDL M++LD+ C SKDD+ GLH+LFPDE+Q+WSF  NW  TT FHCRLEW+
Sbjct: 61  IHNDLRMFILDAHCSSKDDDLGLHILFPDEEQDWSFHDNWLGTTEFHCRLEWQ 111

[Close]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL
Match: A0A1S3BUQ9 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103493877 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 28  KAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQN 87
           K KS+   P+LP P+ P+V+F KF + I+N+L MYLLDS CYSKDD+ G  VL+P+++Q+
Sbjct: 7   KIKSQETGPELPKPHEPLVTFHKFNIRIYNELQMYLLDSHCYSKDDDLGTKVLYPNDEQS 66

Query: 88  WSFKGNWDDTTTFHCRLEWE 108
           WSF+GNW  TT FHC+LEWE
Sbjct: 67  WSFRGNWLGTTNFHCKLEWE 86

[Close]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL
Match: A0A6J1FMU2 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111447244 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 5   RLMPLLLVLLL-LTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYL 64
           R +PLLL+LLL   S  +S+A KKKA++    P+ PDPN P ++  KF V I N L MYL
Sbjct: 8   RRLPLLLLLLLHPVSLTMSVASKKKAET---GPEQPDPNQPAIALRKFDVHIRNGLRMYL 67

Query: 65  LDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEW 107
           LDS C SKDD+ G+ V++PD++Q WSF+GNW  +T FHC+LEW
Sbjct: 68  LDSHCCSKDDDLGVRVIYPDDEQRWSFRGNWLGSTNFHCKLEW 107

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648173.1	2.5e-55	100.00	hypothetical protein Csa_018428 [Cucumis sativus]	[more]
KAE8648169.1	2.5e-55	100.00	hypothetical protein Csa_018483, partial [Cucumis sativus] >KAE8648171.1 hypothe...	[more]
KAE8648167.1	5.1e-32	67.65	hypothetical protein Csa_018435 [Cucumis sativus]	[more]
XP_022933678.1	8.7e-24	53.10	S-protein homolog 2-like [Cucurbita moschata]	[more]
XP_023546843.1	8.7e-24	55.24	S-protein homolog 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_5G014280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIQ4	1.2e-55	100.00	S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G017790 PE=3 SV=1	[more]
A0A0A0KL79	8.8e-30	71.08	S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G016040 PE=3 SV=1	[more]
A0A6J1F5H5	4.2e-24	53.10	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111441018 PE=3 SV=1	[more]
A0A1S3BUQ9	7.9e-23	58.75	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103493877 PE=3 SV=1	[more]
A0A6J1FMU2	1.4e-22	54.37	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111447244 PE=3 SV=1	[more]

BLAST of CsaV3_5G014280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 52..107 e-value: 9.2E-12 score: 45.4
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 32..106
None	No IPR available	PANTHER	PTHR31232:SF47	SUBFAMILY NOT NAMED	coord: 32..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014280.1	CsaV3_5G014280.1	mRNA