CsaV3_4G033240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G033240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CLAVATA3/ESR-RELATED 1
Location	chr4: 23527565 .. 23528521 (-)
RNA-Seq Expression	CsaV3_4G033240
Synteny	CsaV3_4G033240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGACTTTTAATAAATAAATAAAATTGCACTCACTGATAGAAAAGTTTTATGTTTTTTGGTGGCCCATTTTACACTTATCTTTGCTTATGCAATCTATATATATAGGTAATTGTACAAGTGTGTATGAGAAATCTAACAAAAAAAAAAGGAAAAAAAGAAACAACCCCCTTAAAACAAAAGTGTGTGTGTTGTGAAGTTGAATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGAATAGTTATACATTTCTTCTTTTTCTTTCTTTCATTTTTACACTTTCAAGTTCAACGAAATCGCTTGATGAAAGTTGAACTAGAAATGGTAATAGAGAATGAGTTATGCTCAAATTTACGTCGTATTTGTTTTTGTTTTGTCCGTGAGCTATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATACACCACATCATTATTCCTCTTAATTTCTTTTCGATTTTAGTTTCGATCACATAGGTTAGAAGGATTTTAGAGTGAAAAGAAATGTACGTTGTGTTTGATACTCAAGACTTTATCGCTCTCACTTATAATTAGGGATAGACCGTATCACTATTAATTATTAATAAACACCTATTTACGATTATAGTCTATTAGTAACATATGATGTCATTGGGACTAACAAACCTAGAGCTAAATCTAAATTTTGTTTTATTAATAAACTATTTTGTGTTGT

mRNA sequence

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Protein sequence

MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH*

Homology

[Close]

BLAST of CsaV3_4G033240 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of CsaV3_4G033240 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of CsaV3_4G033240 vs. ExPASy TrEMBL
Match: A0A444Y3W2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.7e-04
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 9  ILFWGLVLILLLCSSI---SESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEK 68
          I+ W ++  ++L +SI    E+R + SP   + P+S  ++   +FV+NA++MLK II  K
Sbjct: 3  IISWRVLCFVVLFTSILINHEARPVPSPQPPRRPTSLGHR---VFVENAKQMLKEIIRRK 62

Query: 69 EKLGRHFVSKRLSPGGPDPRHH 88
          + LG  +   RLSPGGP+P HH
Sbjct: 63 QLLGTQYKINRLSPGGPNPHHH 81

[Close]

BLAST of CsaV3_4G033240 vs. TAIR 10
Match: AT1G73165.1 (CLAVATA3/ESR-RELATED 1 )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 14 LVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFV 73
          L+ + L+C S+S     SS S+   P++   K+  + ++ AEE+LK  +E+  + G +  
Sbjct: 7  LLCLFLICVSLSR----SSASRPMFPNADGIKRGRMMIE-AEEVLKASMEKLMERGFN-E 66

Query: 74 SKRLSPGGPDPRHH 88
          S RLSPGGPDPRHH
Sbjct: 67 SMRLSPGGPDPRHH 74

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55081.1	4.2e-37	100.00	hypothetical protein Csa_012463 [Cucumis sativus]	[more]

BLAST of CsaV3_4G033240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G033240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M1	2.1e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1	[more]
A0A444Y3W2	8.7e-04	40.24	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1	[more]

BLAST of CsaV3_4G033240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73165.1	3.9e-04	40.54	CLAVATA3/ESR-RELATED 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033240.1	CsaV3_4G033240.1	mRNA