CsaV3_4G031350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G031350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Location	chr4: 21745126 .. 21745703 (+)
RNA-Seq Expression	CsaV3_4G031350
Synteny	CsaV3_4G031350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGTAGTTTCGATTCGATTTGTAACAAGCACTTGAGATTTTTGTTTTGCTTCTACTGCTGGTGCTGTTGTTTGATTTTGGAGATTCGATCTTTGTCTTGATTTTGTGTTTAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCTTTAACGCTCTATGTGCCGCCGATTCGTAGCCTTAGTTTGTTCGTTGAAACGCTAGAAGATCTTCTCCATCACACCGCCATTCATACCATCAGAGCTTATCCTCGCTTTCGCCTTGCCTTCTCTCGCCTCTTCGCCTCCGTTTTCCGTGTTTCTTACTCCAGGAATCTTGGATCTTGGATCTTGGATATTCTCTCTTCGTTGTTGTATATGGAAGTGATATTTTTATTTGGAATCATTTCTGACGATGGGTTTTCGTTTCGTTTCGTTTCCTTCTTCTTTGATTCTGTTTCCGATCTCCTCAAAGCTTTGGATTGTTTAGATTCTCTGTTTTTGTTCTTCATTTTTCTTGTAATTAGAACATCTAGATGCAATTTCTTATGCAGATTTATGAAACCGATTCAATTCTGTTCAAATCCATTTCCTTAA

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFASVFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCLDSLFLFFIFLVIRTSRCNFLCRFMKPIQFCSNPFP*

Homology

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BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.4e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120
           VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

Query: 121 DSLFLFFIFLVIRTSRCNFLCRFMKPIQFCSNPFP 156
           DSLFLFFIFLVIRTSRCNFLCRFMKPIQFCSNPFP
Sbjct: 121 DSLFLFFIFLVIRTSRCNFLCRFMKPIQFCSNPFP 155

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120
           +FRVS SR               +   F   II DDGFSFRF+SFF DSVSDL +AL+  
Sbjct: 61  IFRVSNSR---------------LNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFS 109

Query: 121 DSLF 125
           +SLF
Sbjct: 121 NSLF 109

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-26
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFRVSYSR 69
           FRVSYSR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-22
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL  HTA HT RAYPRFRLAFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFRVSYSRNLGSWIL 76
          VFRVSYSR+ G  +L
Sbjct: 61 VFRVSYSRSSGCNLL 75

[Close]

BLAST of CsaV3_4G031350 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-22
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL  HTA HT RAYPRFRLAFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFRVSYSRNLGSWIL 76
          VFRVSYSR+ G  +L
Sbjct: 61 VFRVSYSRSSGCNLL 75

[Close]

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120
           VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

Query: 121 DSLFLFFIFLVIRTSRCNF 140
           DSLFLFFIFL+  T    F
Sbjct: 121 DSLFLFFIFLIYETDSILF 139

[Close]

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFRVSYSR 69
           FRVSYSR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-18
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+ FVET+EDLL  TA +++RAYPRFRLAFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 VFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL
Match: A0A6P6AMB2 (uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.4e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+L  T ++T+RAYPR RL FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFRVS 66
          +F +S
Sbjct: 61 IFHLS 65

[Close]

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL
Match: A0A6P6AMC9 (uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.4e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+L  T ++T+RAYPR RL FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFRVS 66
          +F +S
Sbjct: 61 IFHLS 65

[Close]

BLAST of CsaV3_4G031350 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60
          MLQLFF +AFSA PLTLY+PPIR L++FVET+E++     +++ R +PR R+A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VFRVSYSRNLGS 73
           F  S SR L S
Sbjct: 61 FF--SSSRPLSS 70

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649764.1	7.4e-77	100.00	hypothetical protein Csa_012384 [Cucumis sativus]	[more]
KAG6595630.1	2.0e-29	66.13	hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0060071.1	6.0e-26	98.53	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ...	[more]
KAG6603254.1	4.0e-22	81.33	hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037385.1	4.0e-22	81.33	hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_4G031350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF7	1.6e-61	94.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
A0A5A7V2T5	2.9e-26	98.53	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel...	[more]
A0A2C9V7E1	2.9e-18	78.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
A0A6P6AMB2	8.4e-18	75.38	uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=...	[more]
A0A6P6AMC9	8.4e-18	75.38	uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=...	[more]

BLAST of CsaV3_4G031350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	1.8e-12	54.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616:SF5	DIS3-EXONUCLEASE-LIKE PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031350.1	CsaV3_4G031350.1	mRNA