CsaV3_4G030640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030640
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 20605252 .. 20605551 (-)
RNA-Seq ExpressionCsaV3_4G030640
SyntenyCsaV3_4G030640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTCTATTCGGGTTTGCTTGCCAGTGAGAGAGGTAACATTGATGTTGCAGTAGAAGGTGCTCCAACTGAGGCCAAGGCACTCATTTCCACCGTGGTTGAAAACTCTCAACATTTTGGAACTCGATCGACCAACATTTACCCTTCAAATTCAAGTAAGGTAAATGAACTACGTTCTTAATTATCTTACTTAACCACTCTTTTGAAACAGATGACAACTGGAGGACACATTCAACAAAGCATGGTTAGTGGAGTATGTTCAATGATCGGTCATGCCCTCAAGTACAGCAATGAGTGA

mRNA sequence

ATGTACTTCTATTCGGGTTTGCTTGCCAGTGAGAGAGGTAACATTGATGTTGCAGTAGAAGGTGCTCCAACTGAGGCCAAGGCACTCATTTCCACCGTGGTTGAAAACTCTCAACATTTTGGAACTCGATCGACCAACATTTACCCTTCAAATTCAAGTAAGATGACAACTGGAGGACACATTCAACAAAGCATGGTTAGTGGAGTATGTTCAATGATCGGTCATGCCCTCAAGTACAGCAATGAGTGA

Coding sequence (CDS)

ATGTACTTCTATTCGGGTTTGCTTGCCAGTGAGAGAGGTAACATTGATGTTGCAGTAGAAGGTGCTCCAACTGAGGCCAAGGCACTCATTTCCACCGTGGTTGAAAACTCTCAACATTTTGGAACTCGATCGACCAACATTTACCCTTCAAATTCAAGTAAGATGACAACTGGAGGACACATTCAACAAAGCATGGTTAGTGGAGTATGTTCAATGATCGGTCATGCCCTCAAGTACAGCAATGAGTGA

Protein sequence

MYFYSGLLASERGNIDVAVEGAPTEAKALISTVVENSQHFGTRSTNIYPSNSSKMTTGGHIQQSMVSGVCSMIGHALKYSNE*
Homology
BLAST of CsaV3_4G030640 vs. NCBI nr
Match: KAE8649726.1 (hypothetical protein Csa_012965 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.1e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MYFYSGLLASERGNIDVAVEGAPTEAKALISTVVENSQHFGTRSTNIYPSNSSKMTTGGH 60
          MYFYSGLLASERGNIDVAVEGAPTEAKALISTVVENSQHFGTRSTNIYPSNSSKMTTGGH
Sbjct: 1  MYFYSGLLASERGNIDVAVEGAPTEAKALISTVVENSQHFGTRSTNIYPSNSSKMTTGGH 60

Query: 61 IQQSMVSGVCSMIGHALKYSNE 83
          IQQSMVSGVCSMIGHALKYSNE
Sbjct: 61 IQQSMVSGVCSMIGHALKYSNE 82

BLAST of CsaV3_4G030640 vs. NCBI nr
Match: XP_031091054.1 (uncharacterized protein LOC115996048 [Ipomoea triloba])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVA-----VEGAPTEAKALISTVVENSQHFGTR-----------ST 61
           YFY GLL  +R  +D A     V+  PT+AK LIST+ ENSQ +GTR           S+
Sbjct: 101 YFYEGLLPMDRSMVDAASGGSLVDKTPTDAKQLISTMAENSQQYGTRADGSIRRVNEVSS 160

Query: 62  NIYPSNSSKMTT------GGHIQQSMVSGVCSMIGH 76
           +   +  S +TT       G +Q + V G+CS IGH
Sbjct: 161 SQLENKISDLTTLVRQMVVGQMQSTGVCGICSFIGH 196

BLAST of CsaV3_4G030640 vs. NCBI nr
Match: XP_019180076.1 (PREDICTED: uncharacterized protein LOC109175288 [Ipomoea nil])

HSP 1 Score: 57.0 bits (136), Expect = 9.0e-05
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGA-----PTEAKALISTVVENSQHFGTR-----------ST 61
           YFY GLL ++R  +D A  G+     PT+A+ LIST+ ENSQ +GTR           ST
Sbjct: 221 YFYEGLLPTDRSMVDAASGGSLADKTPTDARQLISTMAENSQQYGTRVNGSIRRVNEVST 280

Query: 62  NIYPSNSSKMTT------GGHIQQSMVSGVCSMIGH 76
           +   +  S +TT       G +Q +   G+CS +GH
Sbjct: 281 SQLENKISDLTTLVRQMAVGQMQSTGACGICSFVGH 316

BLAST of CsaV3_4G030640 vs. NCBI nr
Match: XP_038876529.1 (uncharacterized protein LOC120068960 [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEG-----APTEAKALISTVVENSQHFGTRSTNIYPSNSSKMT 61
           YFY+GLL  +R  ID A  G     A  EA+ LIS +VEN+Q+FGTR+T       S + 
Sbjct: 169 YFYNGLLTKDRNLIDSAAGGGLADKALREAQELISRMVENNQNFGTRAT------ESNLA 228

Query: 62  TGGHIQQSMVSGVCSMIGHA 77
            GG + Q    G C ++GHA
Sbjct: 229 QGG-VAQVKACGACGVVGHA 241

BLAST of CsaV3_4G030640 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGAPT-----EAKALISTVVENSQHFGTRSTNIYPSNSSKMT 61
           YFYSGLL+S+R  +D A  GA       E + LIS +VENSQ FG R++ +  S + +++
Sbjct: 228 YFYSGLLSSDRNTVDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVS 287

Query: 62  TGGHIQQSMVSGVCSMIGH 76
           T   + +    GVC ++GH
Sbjct: 288 TPLKVTK---CGVCGLVGH 303

BLAST of CsaV3_4G030640 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGAPT-----EAKALISTVVENSQHFGTRSTNIYPSNSSKMT 61
           YFYSGLL+S+R  +D A  GA       E + LIS +VENSQ FG R++ +  S + +++
Sbjct: 228 YFYSGLLSSDRNTVDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVS 287

Query: 62  TGGHIQQSMVSGVCSMIGH 76
           T   + +    GVC ++GH
Sbjct: 288 TPLKVTK---CGVCGLVGH 303

BLAST of CsaV3_4G030640 vs. ExPASy TrEMBL
Match: A0A5D3CZ23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00950 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGA-----PTEAKALISTVVENSQHFGTRSTNIYPSNSSKMT 61
           YFYSGLL+ +R  +D A  GA     PTEA+ LIS + ENSQ FG R++ +  S + +  
Sbjct: 164 YFYSGLLSFDRITVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKE-- 223

Query: 62  TGGHIQQSMVSGVCSMIGH 76
                      GVC ++GH
Sbjct: 224 ----------CGVCGLVGH 230

BLAST of CsaV3_4G030640 vs. ExPASy TrEMBL
Match: A0A484N1X8 (Retrotrans_gag domain-containing protein (Fragment) OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS36869 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.8e-04
Identity = 33/97 (34.02%), Postives = 48/97 (49.48%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGA-----PTEAKALISTVVENSQHFGTRSTNIYPSNS---- 61
           YFY GLL ++R N+D A  GA      T+A+ L + + +N+Q FGTR T +   N     
Sbjct: 233 YFYEGLLPTDRNNVDAASGGALVNKTHTQARELFNLIAQNTQQFGTRETLVKKVNELESK 292

Query: 62  -------------SKMTTGGHIQQSMVSGVCSMIGHA 77
                        SK+ +GG   + +  GVC + GHA
Sbjct: 293 SIEQKLSELTFMMSKLVSGGGNVRGIHCGVCCLEGHA 329

BLAST of CsaV3_4G030640 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGA-----PTEAKALISTVVENSQHFGTRSTNI--------- 61
           YF+SGLL+ +R  IDV   GA     PTEA+ LIS +VENSQ FG R++ +         
Sbjct: 101 YFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVS 160

Query: 62  -YPSNSSKMTT------GGHIQQSMVSGVCSMIGH 76
              S    MTT       G   +    GVC ++GH
Sbjct: 161 ELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGH 195

BLAST of CsaV3_4G030640 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 36/95 (37.89%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 2   YFYSGLLASERGNIDVAVEGA-----PTEAKALISTVVENSQHFGTRSTNI--------- 61
           YFYSGLL+ +R  +D A  GA     PTEA+ LIS ++ENSQ FG R++ +         
Sbjct: 168 YFYSGLLSFDRNTVDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVS 227

Query: 62  -YPSNSSKMTT------GGHIQQSMVSGVCSMIGH 76
              S    MTT       G   +    GVC ++GH
Sbjct: 228 ELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGH 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649726.13.1e-37100.00hypothetical protein Csa_012965 [Cucumis sativus][more]
XP_031091054.14.0e-0539.58uncharacterized protein LOC115996048 [Ipomoea triloba][more]
XP_019180076.19.0e-0537.50PREDICTED: uncharacterized protein LOC109175288 [Ipomoea nil][more]
XP_038876529.11.2e-0443.75uncharacterized protein LOC120068960 [Benincasa hispida][more]
KAA0025369.11.5e-0440.51uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DIP67.4e-0540.51Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CZ232.8e-0440.51Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A484N1X84.8e-0434.02Retrotrans_gag domain-containing protein (Fragment) OS=Cuscuta campestris OX=132... [more]
A0A5A7V0Q76.3e-0438.95Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7USL56.3e-0437.89Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030640.1CsaV3_4G030640.1mRNA