CsaV3_4G030010 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G030010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	PMD domain-containing protein
Location	chr4: 19755778 .. 19756128 (-)
RNA-Seq Expression	CsaV3_4G030010
Synteny	CsaV3_4G030010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

mRNA sequence

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

Coding sequence (CDS)

ATGGATGTAGGCAGTGATGAATTATTAACTGGTCCTCATATGGCTGATACGACTATTGAGGAAGTTTGCATTTTGAAGACACCCGCTGCAAAATCAGTCGAAGTATCCTTACGTCCCTCTGCTCTTCTCGAGGAGATTCGTCAGGGCAAGATGAAAGTAGGTGGCAAAGATATCAAGAATCCTCCCTCTAGAGGAGGTGTCTGTCCTATAGTGCCTTCAACGAAGGCTACATCCATGCATACTCCTCTCAAGATTTATGAGCCACCTTTAGGCACCTCTATGAAACAGGCAGTAGAACACCCTGAACCTTCACAGTGGGTTGGTGAAAATGTAGTTTCAAATTTCTTTTAG

Protein sequence

MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF*

Homology

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KGN54752.1 (hypothetical protein Csa_012068 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 5.2e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN
Sbjct: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF
Sbjct: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KAA0039587.1 (hypothetical protein E6C27_scaffold744G00610 [Cucumis melo var. makuwa] >TYK01714.1 hypothetical protein E5676_scaffold775G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 8.4e-33
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           +++GSDE LTGPH+ D+TIEEV  LKTP +K  E SL P ALLEEI QGKM VGGKDI++
Sbjct: 211 IELGSDESLTGPHVVDSTIEEVGTLKTPISKPAEQSLCPYALLEEICQGKMTVGGKDIRS 270

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPS+G VCP  P  K +S H PLK  E PL TS +Q     EPSQWVGENVVSNFF
Sbjct: 271 PPSKGDVCPKAPLQKVSSTHAPLKFSESPLNTSNRQTTRDLEPSQWVGENVVSNFF 326

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KAA0040874.1 (hypothetical protein E6C27_scaffold345G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           +++ SDE L GPH+ D+ I++V   KT  +K  + SLRPSALL+EIR+GKM V GKDI +
Sbjct: 66  IELDSDESLMGPHVVDSAIKKVGTSKTSISKPAKQSLRPSALLKEIRRGKMTVEGKDIGS 125

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPS+G VCP VP  K  S H PLK  E PL TS +Q + +PEPSQWVGENVVSNFF
Sbjct: 126 PPSKGDVCPKVPLQKVNSTHAPLKFSESPLDTSNRQTMRNPEPSQWVGENVVSNFF 181

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: TYK00336.1 (hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH  D+  EEV   KTP  K  E SLRPS+ LEEIR+GKM+VGGKD++ P S+
Sbjct: 508 SDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSSFLEEIRRGKMRVGGKDLERPSSK 567

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            GVCP     K +S H PLK  E PLG S KQ   +PEPSQWVGE VVSNFF
Sbjct: 568 EGVCPKASLQKVSSAHAPLKFSELPLGASNKQTTRNPEPSQWVGEKVVSNFF 619

[Close]

BLAST of CsaV3_4G030010 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH  D+  EEV   +TP  K  E SLRPSALLEEIR+GKM VGGKD+++P S+
Sbjct: 521 SDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSALLEEIRRGKMTVGGKDLESPSSK 580

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            G CP     K +S H PLK  E PLG S KQ + +PEPSQWVGE VVSNFF
Sbjct: 581 EGACPKASLQKVSSTHAPLKFSELPLGVSNKQTMRNPEPSQWVGEKVVSNFF 632

[Close]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL
Match: A0A0A0L2B5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.5e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN
Sbjct: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF
Sbjct: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL
Match: A0A5D3BRC1 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00390 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.1e-33
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           +++GSDE LTGPH+ D+TIEEV  LKTP +K  E SL P ALLEEI QGKM VGGKDI++
Sbjct: 211 IELGSDESLTGPHVVDSTIEEVGTLKTPISKPAEQSLCPYALLEEICQGKMTVGGKDIRS 270

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPS+G VCP  P  K +S H PLK  E PL TS +Q     EPSQWVGENVVSNFF
Sbjct: 271 PPSKGDVCPKAPLQKVSSTHAPLKFSESPLNTSNRQTTRDLEPSQWVGENVVSNFF 326

[Close]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL
Match: A0A5A7TBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00270 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.5e-30
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MDVGSDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKN 60
           +++ SDE L GPH+ D+ I++V   KT  +K  + SLRPSALL+EIR+GKM V GKDI +
Sbjct: 66  IELDSDESLMGPHVVDSAIKKVGTSKTSISKPAKQSLRPSALLKEIRRGKMTVEGKDIGS 125

Query: 61  PPSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
           PPS+G VCP VP  K  S H PLK  E PL TS +Q + +PEPSQWVGENVVSNFF
Sbjct: 126 PPSKGDVCPKVPLQKVNSTHAPLKFSESPLDTSNRQTMRNPEPSQWVGENVVSNFF 181

[Close]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL
Match: A0A5D3BQ12 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00140 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.2e-30
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH  D+  EEV   KTP  K  E SLRPS+ LEEIR+GKM+VGGKD++ P S+
Sbjct: 508 SDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSSFLEEIRRGKMRVGGKDLERPSSK 567

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            GVCP     K +S H PLK  E PLG S KQ   +PEPSQWVGE VVSNFF
Sbjct: 568 EGVCPKASLQKVSSAHAPLKFSELPLGASNKQTTRNPEPSQWVGEKVVSNFF 619

[Close]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.4e-30
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSR 64
           SDE LTGPH  D+  EEV   +TP  K  E SLRPSALLEEIR+GKM VGGKD+++P S+
Sbjct: 521 SDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSALLEEIRRGKMTVGGKDLESPSSK 580

Query: 65  GGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 117
            G CP     K +S H PLK  E PLG S KQ + +PEPSQWVGE VVSNFF
Sbjct: 581 EGACPKASLQKVSSTHAPLKFSELPLGVSNKQTMRNPEPSQWVGEKVVSNFF 632

The following BLAST results are available for this feature:

BLAST of CsaV3_4G030010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54752.1	5.2e-59	100.00	hypothetical protein Csa_012068 [Cucumis sativus]	[more]
KAA0039587.1	8.4e-33	64.66	hypothetical protein E6C27_scaffold744G00610 [Cucumis melo var. makuwa] >TYK0171...	[more]
KAA0040874.1	1.1e-29	59.48	hypothetical protein E6C27_scaffold345G00270 [Cucumis melo var. makuwa]	[more]
TYK00336.1	1.5e-29	61.61	hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	1.9e-29	61.61	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G030010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2B5	2.5e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G444640 PE=4 SV=1	[more]
A0A5D3BRC1	4.1e-33	64.66	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TBN8	5.5e-30	59.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BQ12	7.2e-30	61.61	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X8	9.4e-30	61.61	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of CsaV3_4G030010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G030010.1	CsaV3_4G030010.1	mRNA