CsaV3_4G026210 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G026210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 15487274 .. 15487846 (-)
RNA-Seq Expression	CsaV3_4G026210
Synteny	CsaV3_4G026210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATTATTCTGTCTACCACTCTATAATAATTGCCTTATTGCATCTGAGCTGTTGATCCCACCGGGAAATTTCTTTTTAAGGATATTTATTATTCATAAAATAACAACAACAATAAATAAAGTGTCTCTCAGCCGCTGGATCCATGGTGGAGCCGGCACCCGGCGATGGGCCTTGCCAAATGCCGCCCCCGCCGCCGAAGTCAAAAATGGGGAATCGGAAGATTAATTATGAGCACTCATTGGACGGCGGAGAGTGGGGTTGTAAGAGGTTTGGTCTTGCGCGTGGCTTCAGCCGGGTCGGGGAGATTATTGAGTTGAGGAGCCGTCGTCATGGGCTTGATCTACGGCTAACTCTTTGTGTGAGGAGCGGAGATGTAATTCAACCATTAATGAACCAGAAAAATTAATGGTTGTTAAATATATATATATATATATATTCTCTCGGTCCACGTCGTACTTTGACTGAGTCAATCAAATTAAAACTTTTTTTTTTCTTCCTTCTCAAATTTATAGCAATTTATAATTATTATAACCATTTAATATGTAATCTTTCATTTTCTAATTTAAAATTCC

mRNA sequence

ATGGTGGAGCCGGCACCCGGCGATGGGCCTTGCCAAATGCCGCCCCCGCCGCCGAAGTCAAAAATGGGGAATCGGAAGATTAATTATGAGCACTCATTGGACGGCGGAGAGTGGGGTTGTAAGAGGTTTGGTCTTGCGCGTGGCTTCAGCCGGGTCGGGGAGATTATTGAGTTGAGGAGCCGTCGTCATGGGCTTGATCTACGGCTAACTCTTTGTGTGAGGAGCGGAGATGTAATTCAACCATTAATGAACCAGAAAAATTAA

Coding sequence (CDS)

ATGGTGGAGCCGGCACCCGGCGATGGGCCTTGCCAAATGCCGCCCCCGCCGCCGAAGTCAAAAATGGGGAATCGGAAGATTAATTATGAGCACTCATTGGACGGCGGAGAGTGGGGTTGTAAGAGGTTTGGTCTTGCGCGTGGCTTCAGCCGGGTCGGGGAGATTATTGAGTTGAGGAGCCGTCGTCATGGGCTTGATCTACGGCTAACTCTTTGTGTGAGGAGCGGAGATGTAATTCAACCATTAATGAACCAGAAAAATTAA

Protein sequence

MVEPAPGDGPCQMPPPPPKSKMGNRKINYEHSLDGGEWGCKRFGLARGFSRVGEIIELRSRRHGLDLRLTLCVRSGDVIQPLMNQKN*

Homology

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BLAST of CsaV3_4G026210 vs. NCBI nr
Match: KAE8649561.1 (hypothetical protein Csa_017900 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 4.7e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MVEPAPGDGPCQMPPPPPKSKMGNRKINYEHSLDGGEWGCKRFGLARGFSRVGEIIELRS 60
          MVEPAPGDGPCQMPPPPPKSKMGNRKINYEHSLDGGEWGCKRFGLARGFSRVGEIIELRS
Sbjct: 1  MVEPAPGDGPCQMPPPPPKSKMGNRKINYEHSLDGGEWGCKRFGLARGFSRVGEIIELRS 60

Query: 61 RRHGLDLRLTLCVRSGDVIQPLMNQKN 88
          RRHGLDLRLTLCVRSGDVIQPLMNQKN
Sbjct: 61 RRHGLDLRLTLCVRSGDVIQPLMNQKN 87

The following BLAST results are available for this feature:

BLAST of CsaV3_4G026210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649561.1	4.7e-44	100.00	hypothetical protein Csa_017900 [Cucumis sativus]	[more]

BLAST of CsaV3_4G026210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G026210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G026210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G026210.1	CsaV3_4G026210.1	mRNA