Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGGCCAACGGCCAACCGATTTGGGCGGCAGATGAAGGTGACTTAACATTTTCGCAGTTCCCCTTTTGCAAACCAAGTGGTCCGTCCGCCAATTTTCTATTTCTCCACAGAGCTTCGAACTTCACGCCATTAATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGTGAGTAGCTTCTTGTTTAATCTCGTTTTCGTTTGGTTCTACTTTAATCGCAGAGTTTAGGTAAGCTGCAGTGTAGTTGAAAACTTGAAAGGTACTTTTGTGCGATGGAGAGTTGAAAATTGTAATCTCACTGTTCTCTAGATTTTCTATACCGATGTTCTTATGCATTGCGTTATGTAGGCTACGGTGAGCGACCTGCATGGGGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGATTAAGCTGTAGGTTTAGTGTTTTCTACTAGGATCATGCTTGCTCTGTTCTTAATGCTTAATGAAAAAACCATGATATCTCAGTTGGAGTGATTACAAAAAATTTAGAGTGCACCAAGGTCTTAATGATAAGTATTTAAAATCCCCACATATCTCTATAATGGTAAAATATTGTTCACCTTGGGCATAAGCCCTTGGTTTTGCTTATGAAACCACCTCAACAAATCTCATACCGATGGAGATAATGGTTGTGGGACTTTGTTTGCAGTCCTAATAATCCTCCCCTGGAACAAAGTACCATTATGAACCTTCCCACATTCGTCTACCCCTGATCACCTATGAGAGTTTGCTCTTATCTACCTAGTTTCAAAGCCAAGTACAGTACAACCATGAATCATTTATGTGAAACACAATTTGTATCGACCACATAGTCACACCCTCAATCTCCTCATATAGAACAAATATCAACTCCTCTAATAGAGTTATTACTTGCTTGTTGCCCAAATTTGATCAAATCTAGGGATTTGTCCACAAGACTCACTATTACCCACACAACTATGTTTAAACATGGCTCTGATAGCAATTGATAAGGACAATGGAACCTCCACATATCTAAAAGGCTTCATAGCAATGGAGATAATTGTTGTCACTTGTATACTTACAATCACTTCCTGGATTTTGTTTATGCACCCAAAAGTTAATATATACAGTTACGCCTTTGATGAGATAATAAAGGAGTTCAGATATAACTTCTGTGCATGTATTTTGCACTAGATTTGGCTTTCTATTGTCTTTCTGGATAACTAAAGCATGAATTGATACTATACTTGCTGGCAATTCCTTGTGAATTTTGCTATAGTTTTCATTAGTTTTTTCCTTTTGCACCATGGATAAAGATTATGTCTCTCAAAACTCAAAATCACCGATTATCTTCTCTAATATTCTCCTATCCAACAGGAAGAAAATACTATCCTTCTAGACAGCGTCTTACCTTACCTGCAAAACCAGGGTCAAAAGAGAGGCATGTTGTTCTTATCTCAAGCAAGAAACTCCAAGATTACTGCAATGGAAACTTGGAGTACCTGACCATCACATTTAAGGACCTTGGTCCCCAGGTTTCTTTTAGAACACTTTTCTTGTTGGAGTATTTGGGGCCACTCCTTATCTATCCCATGTTTTACCACTTTCCAGTCTATAAGTTCTTCGGCTATAAAGATGAGCGTCATATCTTCCCTGTCCAGACTTATGCCATGTACTATTGGTCCCTTTATTACTCTAAGTGGATCATGGAGACCTTATTTGTTCATAGGTTTAGCCATGAAACTTCATGCTTGTCTACTGTCTTCCGTTGCTGCTAATACTACTGGAGCTTTGGAGCTCTGATGAGCTACTATGTAAACCACCCACTTTACATCCCCGTGACTGACATCCAAATGAAAATTGGTTTTGGATTTGAATTGCTATGTCAATTATATATCCAACCAATATTGTCATCTCATATTGAAGAATCTTAGAGATCCTAGTGGAAAGGGAGGCTACAAAATTCCCCGTGGATTCCTTTTCAATATTGTAACTTGTGCTAACTACACAACTGAAATTTATCAATGGCTTGGATTCAATATTTCAACACAAACTCTTGCTGGTTATATTTTTGTAATGGCGGCTACCTACATTATGACTAAATGGGCAATTGCGAAACACCGCCACTTGGAAAATATGATTACTATTTGCTTCCTCGTTCATGTAAAATGCACTCCCCTCGTTGATATATTGGAAGGCTTTTACTGTACATTTCTTGCTTTTCATAAGTTTTATGCTTAATTTAGTACCCTTGGTTTTCAATTGATGAAGTCTAGATCAAGTTTATAGGGTGATATGTGCTGTCTAATTCCTCATAACTAACAAACTATTCCATCATGATCAAATTGCTCTTTTTCTTATCATGATCTGAGCTTTTTAATCAATTTAGTATGCTTTTCGTAATTCAAATGTCTAAAATAAATTTTGTCTAGGAAAAGGGTTACTGCTTCATCTACAGTTTTTTGTTCTTCCTATATATTCTAATGTTGACTTGGTGTCTTTTGCAGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGAAAACAATAAAAGCCTTCCAGACAACTATGGCTATTGTGCTACTTTAATTAGTATGTTTTTTCCCCATTATAAAACTTGATATAAGTTTTTATAAGGCTTGACCATGAACTCTCATTTCAAAGAGACCTTTTGAGGAGTCTCTAGAGTCTACGCTTTACCTGTTCATTTGAAAGCAATAATTAGATGCAAGAAATTAAATCATTTGACCACTTGAGTAGGCACTGTTAGTCCAATACAACAAAG
mRNA sequence
ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGA
Coding sequence (CDS)
ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGA
Protein sequence
MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDGKEGRPKYPRRWVILPPFF*
Homology
BLAST of CsaV3_4G024940 vs. NCBI nr
Match:
KGN54247.1 (hypothetical protein Csa_017878 [Cucumis sativus])
HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query: 1 MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1 MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
Query: 61 KEGRPKYPRRWVILPPFF 79
KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78
BLAST of CsaV3_4G024940 vs. NCBI nr
Match:
TYK23520.1 (hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa])
HSP 1 Score: 84.0 bits (206), Expect = 6.5e-13
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0
Query: 1 MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI GLRI+DS
Sbjct: 1 MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57
BLAST of CsaV3_4G024940 vs. NCBI nr
Match:
XP_038877634.1 (very-long-chain enoyl-CoA reductase-like [Benincasa hispida])
HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0
Query: 55 DSLLDGKEGRPKYPRRWVILPPFF 79
+ L DGKEGRPKYPRRWVILPPFF
Sbjct: 287 EKLFDGKEGRPKYPRRWVILPPFF 310
BLAST of CsaV3_4G024940 vs. NCBI nr
Match:
XP_022143915.1 (very-long-chain enoyl-CoA reductase-like [Momordica charantia])
HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0
Query: 55 DSLLDGKEGRPKYPRRWVILPPFF 79
+ L DGKEGRP+YPRRWVILPPFF
Sbjct: 287 EKLFDGKEGRPRYPRRWVILPPFF 310
BLAST of CsaV3_4G024940 vs. NCBI nr
Match:
KAF3331621.1 (very-long-chain enoyl-CoA reductase [Carex littledalei])
HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPFF 79
L DGKEGRPKYPRRWVILPPFF
Sbjct: 291 LFDGKEGRPKYPRRWVILPPFF 312
BLAST of CsaV3_4G024940 vs. ExPASy Swiss-Prot
Match:
Q9M2U2 (Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 4.0e-05
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPF 78
+ DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309
BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match:
A0A0A0L0X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query: 1 MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1 MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
Query: 61 KEGRPKYPRRWVILPPFF 79
KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78
BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match:
A0A5D3DJF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00240 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0
Query: 1 MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI GLRI+DS
Sbjct: 1 MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57
BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match:
A0A2U1KPX7 (3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA578200 PE=3 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPFF 79
L DGKEGRPKYPRRWVILPPFF
Sbjct: 289 LFDGKEGRPKYPRRWVILPPFF 310
BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match:
A0A2U1KTR7 (3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA565830 PE=3 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPFF 79
L DGKEGRPKYPRRWVILPPFF
Sbjct: 294 LFDGKEGRPKYPRRWVILPPFF 315
BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match:
A0A6L2M8Q2 (Very-long-chain enoyl-CoA reductase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_042306 PE=3 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPFF 79
L DGKEGRPKYPRRWVILPPFF
Sbjct: 297 LFDGKEGRPKYPRRWVILPPFF 318
BLAST of CsaV3_4G024940 vs. TAIR 10
Match:
AT3G55360.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein )
HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 57 LLDGKEGRPKYPRRWVILPPF 78
+ DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN54247.1 | 6.1e-35 | 100.00 | hypothetical protein Csa_017878 [Cucumis sativus] | [more] |
| TYK23520.1 | 6.5e-13 | 84.21 | hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa] | [more] |
| XP_038877634.1 | 3.2e-04 | 87.50 | very-long-chain enoyl-CoA reductase-like [Benincasa hispida] | [more] |
| XP_022143915.1 | 7.2e-04 | 83.33 | very-long-chain enoyl-CoA reductase-like [Momordica charantia] | [more] |
| KAF3331621.1 | 7.2e-04 | 95.45 | very-long-chain enoyl-CoA reductase [Carex littledalei] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9M2U2 | 4.0e-05 | 80.95 | Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L0X2 | 2.9e-35 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1 | [more] |
| A0A5D3DJF8 | 3.2e-13 | 84.21 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A2U1KPX7 | 3.5e-04 | 95.45 | 3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artem... | [more] |
| A0A2U1KTR7 | 3.5e-04 | 95.45 | 3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artem... | [more] |
| A0A6L2M8Q2 | 3.5e-04 | 95.45 | Very-long-chain enoyl-CoA reductase OS=Tanacetum cinerariifolium OX=118510 GN=Tc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G55360.1 | 2.8e-06 | 80.95 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | [more] |
