CsaV3_4G024940 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G024940
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Very-long-chain enoyl-CoA reductase
Location	chr4: 14618511 .. 14621449 (+)
RNA-Seq Expression	CsaV3_4G024940
Synteny	CsaV3_4G024940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGCCAACGGCCAACCGATTTGGGCGGCAGATGAAGGTGACTTAACATTTTCGCAGTTCCCCTTTTGCAAACCAAGTGGTCCGTCCGCCAATTTTCTATTTCTCCACAGAGCTTCGAACTTCACGCCATTAATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGTGAGTAGCTTCTTGTTTAATCTCGTTTTCGTTTGGTTCTACTTTAATCGCAGAGTTTAGGTAAGCTGCAGTGTAGTTGAAAACTTGAAAGGTACTTTTGTGCGATGGAGAGTTGAAAATTGTAATCTCACTGTTCTCTAGATTTTCTATACCGATGTTCTTATGCATTGCGTTATGTAGGCTACGGTGAGCGACCTGCATGGGGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGATTAAGCTGTAGGTTTAGTGTTTTCTACTAGGATCATGCTTGCTCTGTTCTTAATGCTTAATGAAAAAACCATGATATCTCAGTTGGAGTGATTACAAAAAATTTAGAGTGCACCAAGGTCTTAATGATAAGTATTTAAAATCCCCACATATCTCTATAATGGTAAAATATTGTTCACCTTGGGCATAAGCCCTTGGTTTTGCTTATGAAACCACCTCAACAAATCTCATACCGATGGAGATAATGGTTGTGGGACTTTGTTTGCAGTCCTAATAATCCTCCCCTGGAACAAAGTACCATTATGAACCTTCCCACATTCGTCTACCCCTGATCACCTATGAGAGTTTGCTCTTATCTACCTAGTTTCAAAGCCAAGTACAGTACAACCATGAATCATTTATGTGAAACACAATTTGTATCGACCACATAGTCACACCCTCAATCTCCTCATATAGAACAAATATCAACTCCTCTAATAGAGTTATTACTTGCTTGTTGCCCAAATTTGATCAAATCTAGGGATTTGTCCACAAGACTCACTATTACCCACACAACTATGTTTAAACATGGCTCTGATAGCAATTGATAAGGACAATGGAACCTCCACATATCTAAAAGGCTTCATAGCAATGGAGATAATTGTTGTCACTTGTATACTTACAATCACTTCCTGGATTTTGTTTATGCACCCAAAAGTTAATATATACAGTTACGCCTTTGATGAGATAATAAAGGAGTTCAGATATAACTTCTGTGCATGTATTTTGCACTAGATTTGGCTTTCTATTGTCTTTCTGGATAACTAAAGCATGAATTGATACTATACTTGCTGGCAATTCCTTGTGAATTTTGCTATAGTTTTCATTAGTTTTTTCCTTTTGCACCATGGATAAAGATTATGTCTCTCAAAACTCAAAATCACCGATTATCTTCTCTAATATTCTCCTATCCAACAGGAAGAAAATACTATCCTTCTAGACAGCGTCTTACCTTACCTGCAAAACCAGGGTCAAAAGAGAGGCATGTTGTTCTTATCTCAAGCAAGAAACTCCAAGATTACTGCAATGGAAACTTGGAGTACCTGACCATCACATTTAAGGACCTTGGTCCCCAGGTTTCTTTTAGAACACTTTTCTTGTTGGAGTATTTGGGGCCACTCCTTATCTATCCCATGTTTTACCACTTTCCAGTCTATAAGTTCTTCGGCTATAAAGATGAGCGTCATATCTTCCCTGTCCAGACTTATGCCATGTACTATTGGTCCCTTTATTACTCTAAGTGGATCATGGAGACCTTATTTGTTCATAGGTTTAGCCATGAAACTTCATGCTTGTCTACTGTCTTCCGTTGCTGCTAATACTACTGGAGCTTTGGAGCTCTGATGAGCTACTATGTAAACCACCCACTTTACATCCCCGTGACTGACATCCAAATGAAAATTGGTTTTGGATTTGAATTGCTATGTCAATTATATATCCAACCAATATTGTCATCTCATATTGAAGAATCTTAGAGATCCTAGTGGAAAGGGAGGCTACAAAATTCCCCGTGGATTCCTTTTCAATATTGTAACTTGTGCTAACTACACAACTGAAATTTATCAATGGCTTGGATTCAATATTTCAACACAAACTCTTGCTGGTTATATTTTTGTAATGGCGGCTACCTACATTATGACTAAATGGGCAATTGCGAAACACCGCCACTTGGAAAATATGATTACTATTTGCTTCCTCGTTCATGTAAAATGCACTCCCCTCGTTGATATATTGGAAGGCTTTTACTGTACATTTCTTGCTTTTCATAAGTTTTATGCTTAATTTAGTACCCTTGGTTTTCAATTGATGAAGTCTAGATCAAGTTTATAGGGTGATATGTGCTGTCTAATTCCTCATAACTAACAAACTATTCCATCATGATCAAATTGCTCTTTTTCTTATCATGATCTGAGCTTTTTAATCAATTTAGTATGCTTTTCGTAATTCAAATGTCTAAAATAAATTTTGTCTAGGAAAAGGGTTACTGCTTCATCTACAGTTTTTTGTTCTTCCTATATATTCTAATGTTGACTTGGTGTCTTTTGCAGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGAAAACAATAAAAGCCTTCCAGACAACTATGGCTATTGTGCTACTTTAATTAGTATGTTTTTTCCCCATTATAAAACTTGATATAAGTTTTTATAAGGCTTGACCATGAACTCTCATTTCAAAGAGACCTTTTGAGGAGTCTCTAGAGTCTACGCTTTACCTGTTCATTTGAAAGCAATAATTAGATGCAAGAAATTAAATCATTTGACCACTTGAGTAGGCACTGTTAGTCCAATACAACAAAG

mRNA sequence

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGA

Coding sequence (CDS)

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGA

Protein sequence

MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDGKEGRPKYPRRWVILPPFF*

Homology

[Close]

BLAST of CsaV3_4G024940 vs. NCBI nr
Match: KGN54247.1 (hypothetical protein Csa_017878 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60

Query: 61 KEGRPKYPRRWVILPPFF 79
          KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78

[Close]

BLAST of CsaV3_4G024940 vs. NCBI nr
Match: TYK23520.1 (hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 6.5e-13
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
          MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI  GLRI+DS
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57

[Close]

BLAST of CsaV3_4G024940 vs. NCBI nr
Match: XP_038877634.1 (very-long-chain enoyl-CoA reductase-like [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 55  DSLLDGKEGRPKYPRRWVILPPFF 79
           + L DGKEGRPKYPRRWVILPPFF
Sbjct: 287 EKLFDGKEGRPKYPRRWVILPPFF 310

[Close]

BLAST of CsaV3_4G024940 vs. NCBI nr
Match: XP_022143915.1 (very-long-chain enoyl-CoA reductase-like [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 55  DSLLDGKEGRPKYPRRWVILPPFF 79
           + L DGKEGRP+YPRRWVILPPFF
Sbjct: 287 EKLFDGKEGRPRYPRRWVILPPFF 310

[Close]

BLAST of CsaV3_4G024940 vs. NCBI nr
Match: KAF3331621.1 (very-long-chain enoyl-CoA reductase [Carex littledalei])

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 79
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 291 LFDGKEGRPKYPRRWVILPPFF 312

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy Swiss-Prot
Match: Q9M2U2 (Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-05
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPF 78
           + DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match: A0A0A0L0X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60

Query: 61 KEGRPKYPRRWVILPPFF 79
          KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match: A0A5D3DJF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00240 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
          MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI  GLRI+DS
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match: A0A2U1KPX7 (3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA578200 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 79
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 289 LFDGKEGRPKYPRRWVILPPFF 310

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match: A0A2U1KTR7 (3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA565830 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 79
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 294 LFDGKEGRPKYPRRWVILPPFF 315

[Close]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL
Match: A0A6L2M8Q2 (Very-long-chain enoyl-CoA reductase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_042306 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 79
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 297 LFDGKEGRPKYPRRWVILPPFF 318

[Close]

BLAST of CsaV3_4G024940 vs. TAIR 10
Match: AT3G55360.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein )

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPF 78
           + DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309

The following BLAST results are available for this feature:

BLAST of CsaV3_4G024940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54247.1	6.1e-35	100.00	hypothetical protein Csa_017878 [Cucumis sativus]	[more]
TYK23520.1	6.5e-13	84.21	hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa]	[more]
XP_038877634.1	3.2e-04	87.50	very-long-chain enoyl-CoA reductase-like [Benincasa hispida]	[more]
XP_022143915.1	7.2e-04	83.33	very-long-chain enoyl-CoA reductase-like [Momordica charantia]	[more]
KAF3331621.1	7.2e-04	95.45	very-long-chain enoyl-CoA reductase [Carex littledalei]	[more]

BLAST of CsaV3_4G024940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U2	4.0e-05	80.95	Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 ...	[more]

BLAST of CsaV3_4G024940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0X2	2.9e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1	[more]
A0A5D3DJF8	3.2e-13	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2U1KPX7	3.5e-04	95.45	3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artem...	[more]
A0A2U1KTR7	3.5e-04	95.45	3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artem...	[more]
A0A6L2M8Q2	3.5e-04	95.45	Very-long-chain enoyl-CoA reductase OS=Tanacetum cinerariifolium OX=118510 GN=Tc...	[more]

BLAST of CsaV3_4G024940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55360.1	2.8e-06	80.95	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G024940.1	CsaV3_4G024940.1	mRNA