Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGGTGACCTAACCCATGACACTCATCGTCAGCTCCACCGCCCTCAATGAAAACACTGTTTTAAGAATATATGTAGAGGAATGATAATCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTTGAGTGACAATTAAGACAATTGGCCAATGATATAGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAGTAATAATTCCCATTTCTTAAATTCATCTTTAACTAATTATAATTCTTCCTTGCAGAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGGTTGCCTAAGAAAGAAAGACAACAAACAACAGTTTGATAAGTTCTTAAATGTTTGAAAGCAACTTTACATTAATATACCATTCGTGGATGCACTAGAGCAAATGTCATCTTATGTCATGTTTCTGAAAGACATCTTAGCTAACAAAAGAAAAATCACTGGGTTAGAAACAATGGCTTTAATTGAAATCACGAACAACATCTGTAATATAAGAACACCAGCAAAGATGACAGACCCTGGAAGTTTCACTGTTCCCTCTTTGATAGGCGGAATTAATTTAGGTCGCACACTTTGCGAACTAGGAGCAAGTATCAACTTGATGCCACTATCTATTTTTAAAAAATGGAAAATAGGGGAAATTCAACCAACACTAATAAGGCTTAATTTCGAGGACAGATCCATAGCTAAGCCAGAGGGTAACATTGAAGATGTTTTGGTAAAAGTTGACAAATTCATGTTTCCCACAAATTTCATCATTCTGGACTATGAAGCTGGTAGAGAAGTGCCAATCATTTTAGGGCGGCCATTATTTCTAGCAACATGTCATACTCTCATAGATGTACACCAAGGGGAAATGACCATGTGTATAAATAGGGAGGAAGTAAAATTCAATGTCATTAATGCAATGAAATTTACTACTCATGTTAAAAGTTGGAGCGCCTTAAAAGACCTCGACTGAGACAATTGTGAAGAAGAAGCGTACCAAGATTTGTTTAACACGGAAGAAAACTTTGAAGAATAGACAAGTTCACTTGAAGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA
mRNA sequence
ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA
Coding sequence (CDS)
ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA
Protein sequence
MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETLILNVEERTDLEP*
Homology
BLAST of CsaV3_4G010320 vs. NCBI nr
Match:
KGN53802.1 (hypothetical protein Csa_014694 [Cucumis sativus])
HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1 MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
Query: 61 TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61 TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
Query: 181 ILNVEERTDLEP 193
ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192
BLAST of CsaV3_4G010320 vs. NCBI nr
Match:
KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])
HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0
Query: 50 AERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE---- 109
+ R KG+L NTE NQ GSGKEKCQ VTL S RN +IREP+ ERRN TST T+
Sbjct: 53 SRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSA 112
Query: 110 -----------------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLF 144
QNKN+ ++EV+ +R EEQ ++ S + S P S P F
Sbjct: 113 SNDSNPLNSSLTNNTSSLQNKNIPNKEVESTRREEQRDEESHETTSSNPLSSPPF 167
BLAST of CsaV3_4G010320 vs. NCBI nr
Match:
TYK09552.1 (uncharacterized protein E5676_scaffold757G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 55.5 bits (132), Expect = 6.1e-04
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0
Query: 59 RNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE------------- 118
R T + S KEK Q VTL S RN +IR+P+SE RNPTS TE
Sbjct: 105 RQTMAFCKLGASRKEKGQVVTLRSGRNLTIRKPDSECRNPTSASTTEIDSSSKNSQASNF 164
Query: 119 --------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFP 145
QN N ++EV+ +R EE +AS++ S P SPP FP
Sbjct: 165 SLINDASSLQNNNEPNKEVESTRREEPRGEASNQMMSSNPLSPPPFP 211
BLAST of CsaV3_4G010320 vs. NCBI nr
Match:
KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])
HSP 1 Score: 55.1 bits (131), Expect = 7.9e-04
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = 0
Query: 5 EIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDH--------------HNP-- 64
EII TL G + K DR + + V+ I +DNI+ DH H P
Sbjct: 39 EIIPTLVGEGRAKKIKDDRVVRVIIVVKHLAIDKDNIKTDHTIQHLNNNKLSALLHPPPH 98
Query: 65 ---------------FAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPES 123
F + G+L NT++ +Q GS KEKCQAVTL SER F I +P
Sbjct: 99 LWKLFFAKLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSERIF-IYDPNP 158
BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match:
A0A0A0KZJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1)
HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1 MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
Query: 61 TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61 TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
Query: 181 ILNVEERTDLEP 193
ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192
BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match:
A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0
Query: 50 AERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE---- 109
+ R KG+L NTE NQ GSGKEKCQ VTL S RN +IREP+ ERRN TST T+
Sbjct: 53 SRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSA 112
Query: 110 -----------------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLF 144
QNKN+ ++EV+ +R EEQ ++ S + S P S P F
Sbjct: 113 SNDSNPLNSSLTNNTSSLQNKNIPNKEVESTRREEQRDEESHETTSSNPLSSPPF 167
BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match:
A0A5D3CE56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00350 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0
Query: 59 RNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE------------- 118
R T + S KEK Q VTL S RN +IR+P+SE RNPTS TE
Sbjct: 105 RQTMAFCKLGASRKEKGQVVTLRSGRNLTIRKPDSECRNPTSASTTEIDSSSKNSQASNF 164
Query: 119 --------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFP 145
QN N ++EV+ +R EE +AS++ S P SPP FP
Sbjct: 165 SLINDASSLQNNNEPNKEVESTRREEPRGEASNQMMSSNPLSPPPFP 211
BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match:
A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 3.8e-04
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = 0
Query: 5 EIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDH--------------HNP-- 64
EII TL G + K DR + + V+ I +DNI+ DH H P
Sbjct: 39 EIIPTLVGEGRAKKIKDDRVVRVIIVVKHLAIDKDNIKTDHTIQHLNNNKLSALLHPPPH 98
Query: 65 ---------------FAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPES 123
F + G+L NT++ +Q GS KEKCQAVTL SER F I +P
Sbjct: 99 LWKLFFAKLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSERIF-IYDPNP 158
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN53802.1 | 3.3e-103 | 100.00 | hypothetical protein Csa_014694 [Cucumis sativus] | [more] |
| KAA0041246.1 | 1.5e-10 | 44.35 | uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK... | [more] |
| TYK09552.1 | 6.1e-04 | 39.25 | uncharacterized protein E5676_scaffold757G00350 [Cucumis melo var. makuwa] | [more] |
| KAA0047821.1 | 7.9e-04 | 32.03 | uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KZJ6 | 1.6e-103 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1 | [more] |
| A0A5A7TGS2 | 7.2e-11 | 44.35 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3CE56 | 2.9e-04 | 39.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U2P4 | 3.8e-04 | 32.03 | Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
