CsaV3_4G000120 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G000120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cyclin-dependent kinase
Location	chr4: 99462 .. 100647 (+)
RNA-Seq Expression	CsaV3_4G000120
Synteny	CsaV3_4G000120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTGTTTCTTCTTCTTCTATAAATGGAACCCCCTAACACCCTCTTCGCTGCTACTCAATAAAATCATAAACAACGCCCAATCTCTCTTCTCTATCTTTACCCTTCAATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAGCCCAAACTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCAGGTCTTTTCTCTCTCTCTCTCTAATCTCATCTTCGCCTTCTCAAATCAATTGCGTCCAATCTTAGTTTTCCTTTCTTTTTTGTACCTTCCGATTCTGTGTGATACTCAGATCAGATCGGTTTAAATATTATTTTGGTCTACTCTTAGCTTTGATTCACTCTGTAATTTCAAACAGTTCATTTTGGTTATTGTAATTACTACTCCTTCCAAAATTATAAAAACCAAAATGAATATTCTGAAATAATATAGGAACAAAAAAAGAAAAGTGGTGTTTAAACCATCTAGATATGGAACCGTTTCGGAAACTTGTAATTAGTTATTATGAATCACACAGTATGAACTATTACCAATTTGTCTTTGTGTTCTATCTTGGAATCCGCTTACTTTCATTGCCTGATGGATTGATTTGAAATGAAGTGATGAGATGTGTTTTGGGGAAGGAAATTTGAATGAAATGAAGTGTGAGGAGTTTGTGATTGGTGAAATGAATTGCAATTAAGGAAGGACGAACGGCATGGACGGCGGGCCGCCCAATTACTACGCCACTCTCCATTCCTTCATAATTCATATTAAAGTATTCTCAAACTCAAACACACACATTATTTTATTACGCATTCTTTCATCTCCAAAGTCAATTAATTATTGAGCTCTAAAGTATGTGATTTTGTTCCTCTTTTTTCATATTCAACTTTAAATTAAATTGAATGATGCTTCTATCATGTGCTTAATCGACATCATACTATTCTAAAATTAATTAATTGTTGTAACATTGTCTTTGAGGTGGACCATCTTGAATCATGTGGTGGTAAAATCTAGTTCCATCATAGATTTAAACTTCAA

mRNA sequence

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Coding sequence (CDS)

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Protein sequence

MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGKRTIS*

Homology

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_004150261.1 (uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_014765 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_038905309.1 (uncharacterized protein LOC120091380 [Benincasa hispida])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0044321.1 uncharacterized protein E6C27_scaffold46G00430 [Cucumis melo var. makuwa] >TYK29449.1 uncharacterized protein E5676_scaffold655G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_022922964.1 (uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 uncharacterized protein LOC111810569 [Cucurbita pepo subsp. pepo] >KAG7014932.1 hypothetical protein SDJN02_22563, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RT+S
Sbjct: 61 RTVS 64

[Close]

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL
Match: A0A0A0KT27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL
Match: A0A5D3E160 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00420 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL
Match: E5GBH1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL
Match: A0A1S3BZS5 (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL
Match: A0A6J1D650 (uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017632 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-16
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          M  QL +L+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTI 64
          RT+
Sbjct: 61 RTL 63

The following BLAST results are available for this feature:

BLAST of CsaV3_4G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150261.1	3.4e-23	100.00	uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical ...	[more]
XP_038905309.1	1.7e-22	98.44	uncharacterized protein LOC120091380 [Benincasa hispida]	[more]
XP_008454414.1	3.7e-22	96.88	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	4.8e-22	95.31	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_022922964.1	2.4e-21	93.75	uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 unchar...	[more]

BLAST of CsaV3_4G000120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G000120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT27	1.6e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]
A0A5D3E160	1.8e-22	96.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBH1	1.8e-22	96.88	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZS5	1.8e-22	96.88	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
A0A6J1D650	2.3e-22	95.31	uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CsaV3_4G000120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	5.5e-16	69.84	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF12	SUBFAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G000120.1	CsaV3_4G000120.1	mRNA