CsaV3_3G049780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G049780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 40634613 .. 40636138 (-)
RNA-Seq Expression	CsaV3_3G049780
Synteny	CsaV3_3G049780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGTAAAAGTTTGGTGCAAACATCCAACTACAACATAAATATTACTATTTAGGATATGAATATATGTGGTTAACTTTTAAACCATAATCTATTTAAAATGTGACTATATTTTTTTCTTTTAATTTGATCAAAATAACAACATATATAATTTTTTTCATATTCTATCAATCAAATTTTGTCGTAATTTATAAATATTTTAATTTATTTTACTACTATTAAAAATATATATTTTTTATTATTTTAAATAATGAATTGACATTTATATATATATATATATATATATATATAATATTAAAAATTCAAATTTCCATCTCCTCTTCTCCCTTCTCTAATTCAAATACTTCAAAGCCCCTAAAACCATAATACATCTAGGCACTTCCATGATATTCGTATAAATATAATTAAAAATATATGAAAAGCTTTTCTCCTAAAAATACCTATTAACAAACAAAAAAAAACACAAAAACTCATTATACTTAATTTTGAATTTTGACATAAGTAAATAATTGGTATATTTTTGCTAATTTTGAAAATTGTATTTATTTAAAATATAATGCATGGATCCACCACAAGGGGCGTGCAGTACAGTTGCAATAAATTTCATACGTGGCCAAAATTATTTTGCGGTGAACATATATTTGTATTGTATCATCCAATTCGAAAAAGATTCTGCTTTATTACCTGGAATACCAGAAATAAAACAATTAAATTAAATTACGAAAAAAACGAAGAAGAAAAAATTAAATAAACAATATATATACCAATTAAGGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGTGAGTCTCTTTTCCCCTTTCTCTCATCTTTCCTTTACGCTTTATAGCGAATTCTCTGGATTTTTTTATGTGGGCCGTGCTTGGATTTCAATTTTATATTTGGGTTTCTTTAAAAAAAAAAAAGTTGTGTAATCTTTCTTCCGAGTCTTTCTGAAATTTGAGATAAACGGGCGAAGAATTTGTTGGATCATTTAAAACAGAGAGAAAAGAGAGAGAGAGAGAGAGGAGTGTAGATGGGTCGGTATGAATGAATACCTTGATTATTTTATTGATTACAATTGAATTTTAGATGTCTCGTGTTTGAAATACGATTTTTTTTTTTTTAAATTTTCTGAGGTCAACAAAAGGCTAAGTCAAAATGTTTTACCCAAGATTTATGTTCGGTAGTTTGGTTTTGAATTTTATGTCGACTAATCTGAGGGTGTTTTGATGGTTGTTTTGAATTTTGGGTTCGTTAAATGCAAGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

mRNA sequence

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Coding sequence (CDS)

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Protein sequence

MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSSSGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL*

Homology

[Close]

BLAST of CsaV3_3G049780 vs. NCBI nr
Match: KGN60456.1 (hypothetical protein Csa_002425 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 5.2e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 98
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

[Close]

BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL
Match: A0A0A0LKD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 98
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

The following BLAST results are available for this feature:

BLAST of CsaV3_3G049780 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60456.1	5.2e-52	100.00	hypothetical protein Csa_002425 [Cucumis sativus]	[more]

BLAST of CsaV3_3G049780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKD6	2.5e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1	[more]

BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G049780.1	CsaV3_3G049780.1	mRNA