CsaV3_3G049780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G049780
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 40634613 .. 40636138 (-)
RNA-Seq ExpressionCsaV3_3G049780
SyntenyCsaV3_3G049780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGTAAAAGTTTGGTGCAAACATCCAACTACAACATAAATATTACTATTTAGGATATGAATATATGTGGTTAACTTTTAAACCATAATCTATTTAAAATGTGACTATATTTTTTTCTTTTAATTTGATCAAAATAACAACATATATAATTTTTTTCATATTCTATCAATCAAATTTTGTCGTAATTTATAAATATTTTAATTTATTTTACTACTATTAAAAATATATATTTTTTATTATTTTAAATAATGAATTGACATTTATATATATATATATATATATATATATAATATTAAAAATTCAAATTTCCATCTCCTCTTCTCCCTTCTCTAATTCAAATACTTCAAAGCCCCTAAAACCATAATACATCTAGGCACTTCCATGATATTCGTATAAATATAATTAAAAATATATGAAAAGCTTTTCTCCTAAAAATACCTATTAACAAACAAAAAAAAACACAAAAACTCATTATACTTAATTTTGAATTTTGACATAAGTAAATAATTGGTATATTTTTGCTAATTTTGAAAATTGTATTTATTTAAAATATAATGCATGGATCCACCACAAGGGGCGTGCAGTACAGTTGCAATAAATTTCATACGTGGCCAAAATTATTTTGCGGTGAACATATATTTGTATTGTATCATCCAATTCGAAAAAGATTCTGCTTTATTACCTGGAATACCAGAAATAAAACAATTAAATTAAATTACGAAAAAAACGAAGAAGAAAAAATTAAATAAACAATATATATACCAATTAAGGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGTGAGTCTCTTTTCCCCTTTCTCTCATCTTTCCTTTACGCTTTATAGCGAATTCTCTGGATTTTTTTATGTGGGCCGTGCTTGGATTTCAATTTTATATTTGGGTTTCTTTAAAAAAAAAAAAGTTGTGTAATCTTTCTTCCGAGTCTTTCTGAAATTTGAGATAAACGGGCGAAGAATTTGTTGGATCATTTAAAACAGAGAGAAAAGAGAGAGAGAGAGAGAGGAGTGTAGATGGGTCGGTATGAATGAATACCTTGATTATTTTATTGATTACAATTGAATTTTAGATGTCTCGTGTTTGAAATACGATTTTTTTTTTTTTAAATTTTCTGAGGTCAACAAAAGGCTAAGTCAAAATGTTTTACCCAAGATTTATGTTCGGTAGTTTGGTTTTGAATTTTATGTCGACTAATCTGAGGGTGTTTTGATGGTTGTTTTGAATTTTGGGTTCGTTAAATGCAAGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

mRNA sequence

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Coding sequence (CDS)

ATGGCAGCACATGATTGGGCCACGTGGTTAGGATGGTTCTGCCGTTTCCAATTTCGCGTTAATACACATCACATTCATCATCCAAGTTGTCTTCCTTCCGCCGCTGCTTTTAAATTAAACTTCCTTTCACTCTCGAAATTTGCGCTTTCCAATTCCATTCCCCATAGTTTTCTCTCTTCTTCAGGATCATTTCCCCTCATTTTCCTCTCCTCTAACAATATCTCCCCTTCTCCTTGGATTCCTCCGCCACACCATTCTTCCTGGGGTAAGATGGGTTTTCACGATGTGTTGTAG

Protein sequence

MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSSSGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL*
Homology
[Close]
BLAST of CsaV3_3G049780 vs. NCBI nr
Match: KGN60456.1 (hypothetical protein Csa_002425 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 5.2e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 98
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

[Close]
BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL
Match: A0A0A0LKD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60
          MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS
Sbjct: 1  MAAHDWATWLGWFCRFQFRVNTHHIHHPSCLPSAAAFKLNFLSLSKFALSNSIPHSFLSS 60

Query: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 98
          SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL
Sbjct: 61 SGSFPLIFLSSNNISPSPWIPPPHHSSWGKMGFHDVL 97

The following BLAST results are available for this feature:
BLAST of CsaV3_3G049780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60456.15.2e-52100.00hypothetical protein Csa_002425 [Cucumis sativus][more]
BLAST of CsaV3_3G049780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKD62.5e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912880 PE=4 SV=1[more]
BLAST of CsaV3_3G049780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G049780.1CsaV3_3G049780.1mRNA