CsaV3_3G049620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G049620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosomal_L30 domain-containing protein
Location	chr3: 40451302 .. 40451652 (+)
RNA-Seq Expression	CsaV3_3G049620
Synteny	CsaV3_3G049620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

mRNA sequence

ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

Coding sequence (CDS)

ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

Protein sequence

MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVRLLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG*

Homology

[Close]

BLAST of CsaV3_3G049620 vs. NCBI nr
Match: KGN60438.1 (hypothetical protein Csa_002032 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
           MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR
Sbjct: 1   MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60

Query: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
           LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116

[Close]

BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL
Match: A0A0A0LF89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
           MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR
Sbjct: 1   MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60

Query: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
           LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116

[Close]

BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL
Match: A0A0A0LC45 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G229370 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 46  NSSFVFLLHEFTWVRL----LH----SWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQ 105
           + SFVF++ +F ++RL    +H    +WV SP S+L SPFVAIRH PFSVGSFAAKFS Q
Sbjct: 4   SKSFVFVVRQF-FIRLPPTRVHVGSFTWVPSPFSILRSPFVAIRHSPFSVGSFAAKFSSQ 63

Query: 106 AILILIVDLLFLFLDRNRG 117
            I ILIVDLLFLFLDRN G
Sbjct: 64  VISILIVDLLFLFLDRNSG 81

The following BLAST results are available for this feature:

BLAST of CsaV3_3G049620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60438.1	3.5e-55	100.00	hypothetical protein Csa_002032 [Cucumis sativus]	[more]

BLAST of CsaV3_3G049620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF89	1.7e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1	[more]
A0A0A0LC45	3.8e-15	64.56	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G2293...	[more]

BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G049620.1	CsaV3_3G049620.1	mRNA