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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA mRNA sequence ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA Coding sequence (CDS) ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA Protein sequence MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVRLLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG*
Homology
BLAST of CsaV3_3G049620 vs. NCBI nr
Match: KGN60438.1 (hypothetical protein Csa_002032 [Cucumis sativus]) HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR
Sbjct: 1 MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
Query: 61 LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61 LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116
BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL
Match: A0A0A0LF89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR
Sbjct: 1 MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVR 60
Query: 61 LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61 LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116
BLAST of CsaV3_3G049620 vs. ExPASy TrEMBL
Match: A0A0A0LC45 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G229370 PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0
Query: 46 NSSFVFLLHEFTWVRL----LH----SWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQ 105
+ SFVF++ +F ++RL +H +WV SP S+L SPFVAIRH PFSVGSFAAKFS Q
Sbjct: 4 SKSFVFVVRQF-FIRLPPTRVHVGSFTWVPSPFSILRSPFVAIRHSPFSVGSFAAKFSSQ 63
Query: 106 AILILIVDLLFLFLDRNRG 117
I ILIVDLLFLFLDRN G
Sbjct: 64 VISILIVDLLFLFLDRNSG 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN60438.1 | 3.5e-55 | 100.00 | hypothetical protein Csa_002032 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LF89 | 1.7e-55 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1 | [more] |
| A0A0A0LC45 | 3.8e-15 | 64.56 | Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G2293... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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