CsaV3_3G039460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039460
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 32461226 .. 32461466 (-)
RNA-Seq ExpressionCsaV3_3G039460
SyntenyCsaV3_3G039460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAAAATATGTTTAAAACATATATATTGGTTAGGTCTAAAACCCCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTAACCTTTCAGCTGTCACCCACGGCTGCGCTATCAACTCTTTTGCTCAAGCTCTGCCGCCGTCGTCTCCAGTCGCTCGTCGCCGGTGAGCGTTTGCCTCAAGCTTTACGCCGATTTTCTCTCCGCTGCTGTCTGCTGTTCGTCGCCGGTGCTACAGTTTAG

mRNA sequence

AACCCCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTAACCTTTCAGCTGTCACCCACGGCTGCGCTATCAACTCTTTTGCTCAAGCTCTGCCGCCGTCGTCTCCAGTCGCTCGTCGCCGGTGAGCGTTTGCCTCAAGCTTTACGCCGATTTTCTCTCCGCTGCTGTCTGCTGTTCGTCGCCGGTGCTACAGTTTAG

Coding sequence (CDS)

AACCCCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTAACCTTTCAGCTGTCACCCACGGCTGCGCTATCAACTCTTTTGCTCAAGCTCTGCCGCCGTCGTCTCCAGTCGCTCGTCGCCGGTGAGCGTTTGCCTCAAGCTTTACGCCGATTTTCTCTCCGCTGCTGTCTGCTGTTCGTCGCCGGTGCTACAGTTTAG

Protein sequence

NPRLLSLSLSLSLTFQLSPTAALSTLLLKLCRRRLQSLVAGERLPQALRRFSLRCCLLFVAGATV*
Homology
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BLAST of CsaV3_3G039460 vs. NCBI nr
Match: KGN59514.2 (hypothetical protein Csa_023527, partial [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  NPRLLSLSLSLSLTFQLSPTAALSTLLLKLCRRRLQSLVAGERLPQALRRFSLRCCLLFV 60
          NPRLLSLSLSLSLTFQLSPTAALSTLLLKLCRRRLQSLVAGERLPQALRRFSLRCCLLFV
Sbjct: 1  NPRLLSLSLSLSLTFQLSPTAALSTLLLKLCRRRLQSLVAGERLPQALRRFSLRCCLLFV 60

Query: 61 AGATV 66
          AGATV
Sbjct: 61 AGATV 65

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039460 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59514.22.0e-23100.00hypothetical protein Csa_023527, partial [Cucumis sativus][more]
BLAST of CsaV3_3G039460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G039460.1CsaV3_3G039460.1mRNA