CsaV3_3G037880 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G037880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NDR1/HIN1-like protein 1
Location	chr3: 31203199 .. 31209194 (-)
RNA-Seq Expression	CsaV3_3G037880
Synteny	CsaV3_3G037880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATGGGCCACCATTCAAAATGTTTCGTTTGGGCTTTGACTATGACAAGGTCTGGCCCAATCCTTCCAAATTTTAATAGTCATGTTAACCATCATCCTGACCTTATTTTTTTCTTCTTAAAAATAATAAATTAAGAGTACATACTTTACCATTAGAGGAAGTTAATCCAAAATTTCAGGTTTTGTCTTTAGTAAATGAGATTAAAATTGTAAACATTCTAACTTATCCAAATAATAATAAGAGTGACATTGTCTTAGCTTATTCTTGAAGAACTTGATCCTATTAAACCAAATCATGTATTTTTGTGTTTTTGTTATCCAACAACTTTTAGGTGTCAAGAACTTTTCCTCAACGTAGCATAAGAAAAATCGTTTTTATTGTGAATCTCGTCTCTAACTTTCTTAAGCCTTATTTTATAAATAATGATTAGAGGTGAGATTGAGATTGTTTATTATTAAATAATACTGTGTTATATAAATGATGAATTCATATAATTGGATTGGGGATTACATGATGTGTGTTGTGAATTATGTTCATATATAAAAGGACAATCAATCAAACATTATTGCCTTTTAGATGACACAACCACCATATCCCTTCTCATCTCATTAGCCTTTTTTTTCACAAGCCATCACATGAGAGATGCCATTTTTTAAAATTATTTTGTATATAATAAGGTGAGAAAAATTCAAATTCAAATTTGGGAGATAAAATCACCTTATTTGTTTCAATGATGGAAATGCCAATTAGGGTTGTATCATGCATTAATAATTTGTAAGTCTCTTTCATTTTATTGACCCTTTAATCATACAATAAAACCTAGATCTAAAAAACCTAAGAAAGGTGTATACACAACCATAACATTTTGAAATCTTATACAAATGAATCTATCTATATAATTGAATAATCTTTTAAGGACCCACCCCATCACTAAGCAAACTCCTAACATTAGAGCTACAAATGAGGGAATTTTTTTTGGACAATTGGACAATATTATCATATATCTAACATAAATTGTTATTTTTTATACTATATATTTTGAATAATATATGTGTTTCGTCATTTATTAATTCTTTACTTTGTAATAATAGAATTAAATTAAAGGTATCTAAAGTAACTTTTTTACTATTTTAAATAATTATATGAAATTGTAAATTAGAAAAAATATTTTTTTAAAAAACAAATCAAGATAATTTTTTTAAAAAAAATCAATCTTAATTTAAAGTATATAAAATGATTATTGCAAGAAACATGGTGTATTTTGAAAACGGAGAGACTAAATGTATATATTCTTAAAGTTTTAAAGATTAAAATAATATACTATAAAGATAAGACCAAACACATTTACTGTTGAAAGCATCCAAACTAAAAACATAAATTTTCAATTATTTATATAAATTTTTTATTTTAAAATATTGAAAAATTCTTACATGCTGCTTTTTAGAAGAAGAAAAAAATAATATCTATATTTAATAAAGCTATGTTTAATGTAAGAATCAAGTTGAGACTTACTTAAACAAATGAAAAGAATCAAAGTAAAAGAATGTAGGGAAAATATTGAATATTTTAATAGTTCAAAATCTTAAGAAAGAAAAAAAGAAAACGGGCAAAAATTAATTTGTCAAATGATAAAACGTGAATGAGGATTTAGTTAATCGAACCTATGTATATTTAATTAAGCTACTTTTGTTAATTATAATTAAGATACATTTGTGTTATATGGTAATATATAAATTATATAATATGCTTAATTTTGTTGACTTGTTGAAAAGAAAAATCATAGCAGCCCTGACTAGAAACATCCCATCATATGCATAATTGATAACATTGTGATTTCTTTTAAAGAGATAATATTATAAAGAAGAAAAAAAATGCCACTTTTCAAGTTCAGTTCTCCTAATGTTTCTCTGTTCTATATATGTCTCTTTCATATATTCTAATATAATTTTAAATTATTATTAAGATTTCTAATAAAAGTATTTTTAATTTTATGCACACCATAACGTATTTGTTTTCATTTTTTTAAAAAATTGTTTAAATGTTATATCAACAAGATTTTTAATCGATAACTACTTGATGGATGAATAATCGAAATTGATAATATAAATTTGTGGTTGAATTACACTTCTTTCATATAATATAACTTTAAACTTGTTATTGTAATCTAAGCTTTACTACTGTGTGATTTAGAATTTTATGGATTGTTTTAGAAAGTATGAGGTGAAATATATGTTTTAAATTTTAAGAACTAAGTACACATAAAATTTTCAAAAAATAAAAATAAAAACTTAAAATTTCAATGGTAACTTTATTCAATTTGGAAATTTAAACTAATTTGATTTACATATTAATTTTATTCTAAACTCAAATTTAATTAAAATATATGTTTTATCTCGATTTTAAAAACATATTCAAATATTGAAAATTATTATTATGTAGTAACCCATTTTAGTTAAAAAAATCAATATTTCTATGAGGTTTTTTTTTTTTTTGTCTGAAAAAAAGAATTTAGAAGGAAATCAAATCATTAAAAGTAGATAGATTAAAATTGAATAAAGTGGAATTTATTTGTTGTTGTAGCTATCAAATTAAAGGTGGGTTTTGAAACTGAGAGAAATACGGATGTAGACAATGTAAAGTTTGATTCATATTAAACTTTGTCTCTTCAAATATTTGAATAACCCTACAAACTTACCTTCTTATCCTCTGTGAGATAAATTAAACAAACACCCATTCTTCAATTCAAATACTTATCCATGATTTCAATTTCATATTCTTTCTTTCACACAATATTTAATTTTATAAAAAAAAAAAAAACACACAACACGAATAACACCTTTTCCACGTTTTAGACTATGATATTTAATTTATCTGCTCACATGTAAATATATCAAGCAAATAAGATCATACATCATTTGAAATAATTAAAGTAAATATTTAACATTTTAAGAATTGTTTTATAAAAATAAAAAACTAAATAAAAATAAGCAAAGGTTATATATTGAATTAATAAATGAAGAGAAGAAAATTGTGGGAAGAAAATAATAAATGGAAAGGGAAGAGGAAGTAAGCAAACAGAAAAGGGTGTCGTATTATGTGGCCGCCGACACTATTGCGTCGGTGCATTGCATTTTGCACACCAAAGGAAGGGGATTGCTGACGTGTAACTTTAGTGGTCCCCACGTACTCCACGTCGCTTTTGACTTTTTCAACATCAATCAATATCCAAACGCCAACGGCTAACCTTTGCCATTCATTCCCCAATATTCTACAACCCGCCCCATCCCTAACCATTCATTTATATTCATCTTAAATTTAACCTTGGTTACTTTTAAATTAAATCATTAATTCGTTATTAAATTGGTTTATACTATAGTTTTTTTTTATACCAAATGTATTAACTTATACCATTTTTCACCCAAATTAAATCGACCAATTTAGATCATTTACTAAGTTGTAAATTTATTCGAACATTTGTTTCATAAAACCAACTAGCAAAATATATTATATAATAAAATTGATAATGAATTGGGTTTTTTTTTTTAAAAAAAAAAGTAAACTATTTACGTTGCAAAAAATATAAAAGACAAAGATTTAGTGTAAATGTTTAATTTATTTTTTCGTTTTTGACAACTCTCTCGTTTAGTTTAATTAACTTAAAGGAAAATCAAAACAAAGTTTCCACCTTTCATGGTTAGCTTTTTTTTTCACCCTTTTTAAGTATGTATTTTTGCTGTATATACATTTTACATATTATTTTGTTCTATATCATACCGCCAAATCATCTTTGTACATTTCAAATCAAATTGTTATATACATAAACAATAAAGAAAACGACTTGTAGTGATAAAAAAGGATTAAAAATAAAATAAATGCAGCGATAATAAAAAGGTTATAGTAAAGACTCTAGAATATAGAGAAAGATAAATGAAAAGTAAATAAGGTGAAAATTCCATCCATTAAGATAATAAGACAACATAAATAAATACACAGCTAACATTAAATTAGATTAACACCGCCATTCCATTCACTTTAAACCTCCAAATCAACTTCAACAACACAAGACTTCCCCCTTAATCTTTTTTCCTCTCAATTATTGAGACATTAATAATAAAGAAATATAAGAAAAAAAGAAAAAAGAATGAAAAAGTTTAACCTTCCTATCCTTTGTTGACCAAAGAAAAAGAAAAAAGAGAAGGGGGCAGAACCGTGTGTGAATAGAAATCCATAATTAGGTTAAAAAAGAAGAGAAATTTGTATTAGTTGTAATTATTATATTATCATCACCCCATGTGATGATTTTTAATTTTTGAGCAGTTCGCGTTTTTTCGGATCGGGGTATGGATCCAAGACCATATTAATGGAATTTCCAATATTTATTAAACAGAATCTTAATTCAATTAAAATATGCATATTTTAATTATTCAGTATATTACATTTCCTCATTTTATTTACTACTTGGTTTTATTTTGATGTAGATGAATTAAATATGTTCACTAAAATGATGTAAAGATCTTGATGACAAGGAGTGTATAATTTTGTAGGAAGGAGAAGGTGTAGATGGCAAGAAAAACAACACTTTGTATATAAAGGGAGAAAAAAGAAAGCGTGAAAGTTGGAAAAAGGGAATTATTTATTTCGTAATTAATAAAAAGTAGATGTAAATTCTACTTTTTCTTTGACAATCGTGTGAATTCCTATTCCCATTATGGTTGTGACGTCTCTATTCTTGTCCTTCATTTTTAAATATCTTTATTTTAATTCCTAAGTCTTGTTGGTTGCCACAAAAACCAACTTATTCGTGCTTCTTCATCTTCGAATACAGCGAAGTTGATTAGAATCATTTATTTTTATAAAATCCAGAACTAAAATGAAATTAATAATTTATCAATAGAGAGATTTGAAACTAAAAAACTCTTAATGAGGCTATAAACATTATATGAAAGTTTAAATTAAGTTGGGTTACATGAAATTAATAATTTAGAGGATATTTGCGTTACCGATTTGATAAGTTAAAAGTTAAAAGTTAATTAATGTTAGATAATTCAATTATAGGAATTTTAATAGTACTGAAGTTGAATTTTCGAAGCCGAACATATTTATTTAACACAAAACTTAGGTAACTTAATTCGGCTCCTAATTAAAGAGCTAGTGTGGAGATATTTGAAGGAAATGTTACGAGAGTATGAAAAAGGACATAGTGGTGGGACCAGATTGAAAATGGAGGGTGGAGATTAAATATAAATACCATTCATTCTTCTACACACTCACATGAGATTTCTCCTCTTAACCCACCCACTGCTCATTTAACACAAACGCCATTTCCTTTCTTCTTCTTCGCCGCCCGGAACACCCATGGCCTACGACTGCGAGAAGCACTGCAAGAAAAAACGCAAGAAGCTCATCAAACTAATCGGCGCAATCATCGGCATCTTCATCTTCCTCGTCCTCCTCACCATCCTCATCGTCTGGGCCGTCCTCCGTCCCACCAAACCCACTTTCTTCCTTCAAGACGTCACCGTCTACGCCTTCAACGCCACCGTCCCCAGCTTCCTCACCTCCAATTTCCTCCTCACTGTTTCCTCCCGCAACCCAAACCGCCGAATCGGAATCTACTACGACGAACTCCACGTCTACGCCATCTACCGAAACCAACAGATCACTCTCCGGACCATCATCCCTCGTTTCTACCAAGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGAGCTGAATCAAGACAGGAACGCCGGAGCACTGATGCTCCTGGTCAAAATTGACGGCAAGGTTCGATGGAAGGTCGGAAGCTTCATCACTGGGCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGAACGGAGACGGGTCGATTGTTCAGTACAACGTGAAGTACCAAGTGGTTCAGAAATGCGATGTTAGTGTTTGA

mRNA sequence

ATGGGCTATGGGCCACCATTCAAAATGTTTCGTTTGGGCTTTGACTATGACAAGATCACTCTCCGGACCATCATCCCTCGTTTCTACCAAGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGAGCTGAATCAAGACAGGAACGCCGGAGCACTGATGCTCCTGGTCAAAATTGACGGCAAGGTTCGATGGAAGGTCGGAAGCTTCATCACTGGGCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGAACGGAGACGGGTCGATTGTTCAGTACAACGTGAAGTACCAAGTGGTTCAGAAATGCGATGTTAGTGTTTGA

Coding sequence (CDS)

ATGGGCTATGGGCCACCATTCAAAATGTTTCGTTTGGGCTTTGACTATGACAAGATCACTCTCCGGACCATCATCCCTCGTTTCTACCAAGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGAGCTGAATCAAGACAGGAACGCCGGAGCACTGATGCTCCTGGTCAAAATTGACGGCAAGGTTCGATGGAAGGTCGGAAGCTTCATCACTGGGCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGAACGGAGACGGGTCGATTGTTCAGTACAACGTGAAGTACCAAGTGGTTCAGAAATGCGATGTTAGTGTTTGA

Protein sequence

MGYGPPFKMFRLGFDYDKITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQVVQKCDVSV*

Homology

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BLAST of CsaV3_3G037880 vs. NCBI nr
Match: KAE8651111.1 (hypothetical protein Csa_000985 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MGYGPPFKMFRLGFDYDKITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQD 60
           MGYGPPFKMFRLGFDYDKITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQD
Sbjct: 1   MGYGPPFKMFRLGFDYDKITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQD 60

Query: 61  RNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQV 120
           RNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQV
Sbjct: 61  RNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQV 120

Query: 121 VQKCDVSV 129
           VQKCDVSV
Sbjct: 121 VQKCDVSV 128

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BLAST of CsaV3_3G037880 vs. NCBI nr
Match: XP_004136510.1 (NDR1/HIN1-like protein 1 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 114/129 (88.37%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ
Sbjct: 143 DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. NCBI nr
Match: KAA0043819.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISS LNQ
Sbjct: 151 RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQ 210

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGS+VQYNVKYQ
Sbjct: 211 DRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSMVQYNVKYQ 270

[Close]

BLAST of CsaV3_3G037880 vs. NCBI nr
Match: XP_008442910.2 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK25313.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISS LNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGS+VQYNVKYQ
Sbjct: 143 DRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSMVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. NCBI nr
Match: XP_038906208.1 (NDR1/HIN1-like protein 1 [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 109/129 (84.50%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGT+VPVAPFISS LNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTAVPVAPFISSALNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALMLLVKIDGKVRWKVG+FITGRYQFHANCPVVINFGAYPA GDGSIVQYNVKYQ
Sbjct: 143 DRNAGALMLLVKIDGKVRWKVGNFITGRYQFHANCPVVINFGAYPATGDGSIVQYNVKYQ 202

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BLAST of CsaV3_3G037880 vs. ExPASy Swiss-Prot
Match: Q9SRN0 (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.0e-29
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 18  KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVR 77
           +IT  T IP  YQGHKDV++WSPFV GTSVP+APF    L+ D++ G ++L+++ DG+VR
Sbjct: 101 QITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVR 160

Query: 78  WKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYN-VKYQVVQKCDVSV 129
           WKVG+FITG+Y  H  CP  INFG      +G IV  N VKY     C VSV
Sbjct: 161 WKVGTFITGKYHLHVKCPAYINFG---NKANGVIVGDNAVKYTFTTSCSVSV 209

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BLAST of CsaV3_3G037880 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-26
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 11  RLGFDYDK-----------ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD+           ITLRT IP  YQGHK+ NVWSPFV G SVP+APF +  L  
Sbjct: 84  RIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGD 143

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           ++N G + L+++ DG+VRWKVG+ ITG+Y  H  C   IN     A     + +  VKY 
Sbjct: 144 EQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG--VHVGENAVKYM 203

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BLAST of CsaV3_3G037880 vs. ExPASy Swiss-Prot
Match: Q9FI03 (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-17
Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 11  RLGFDYDK-----------ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           ++G  YDK           IT    +P FYQ H+++N+ + F+ GT +PVA     ++++
Sbjct: 92  KVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISR 151

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFG 102
           +R+ G +++ +K+DGK+RWK+G++++G Y+F+ NC  ++ FG
Sbjct: 152 ERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFG 193

[Close]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL
Match: A0A0A0LB20 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779770 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 114/129 (88.37%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ
Sbjct: 143 DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL
Match: A0A5A7TRJ4 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001520 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISS LNQ
Sbjct: 151 RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQ 210

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGS+VQYNVKYQ
Sbjct: 211 DRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSMVQYNVKYQ 270

[Close]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL
Match: A0A5D3DNV1 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004510 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISS LNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGS+VQYNVKYQ
Sbjct: 143 DRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSMVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL
Match: A0A1S3B6T7 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103486673 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISS LNQ
Sbjct: 83  RIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DRNAGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGS+VQYNVKYQ
Sbjct: 143 DRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSMVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL
Match: A0A6J1G5B0 (NDR1/HIN1-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111450912 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 96/129 (74.42%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 11  RLGFDYD-----------KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD           +ITLRTIIP FYQGHKDVNVWSPFVSGT+VPVAPFISS LNQ
Sbjct: 83  RIGIYYDDLRVYAVYRNQQITLRTIIPGFYQGHKDVNVWSPFVSGTAVPVAPFISSALNQ 142

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           DR+AGAL+LLVK++G+VRWKVG+FITGRY  HANCP  INFG YP+  DGSIVQYNVKYQ
Sbjct: 143 DRSAGALLLLVKLEGRVRWKVGNFITGRYHLHANCPAAINFGGYPSPSDGSIVQYNVKYQ 202

[Close]

BLAST of CsaV3_3G037880 vs. TAIR 10
Match: AT3G44220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 129.0 bits (323), Expect = 2.7e-30
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 18  KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVR 77
           ++TL T++P  YQGH DV +WSPF+ GT+VPVAP+ S  L+QD  AG ++L +KIDG VR
Sbjct: 101 QVTLATLLPATYQGHLDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVR 160

Query: 78  WKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQVVQKCDVSV 129
           WKVG++++GRY+ H NCP  I    +  +GDG      VKYQ+VQ+C V V
Sbjct: 161 WKVGTWVSGRYRLHVNCPAYITLAGH-FSGDGPA----VKYQLVQRCAVDV 206

[Close]

BLAST of CsaV3_3G037880 vs. TAIR 10
Match: AT3G11660.1 (NDR1/HIN1-like 1 )

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 18  KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVR 77
           +IT  T IP  YQGHKDV++WSPFV GTSVP+APF    L+ D++ G ++L+++ DG+VR
Sbjct: 101 QITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVR 160

Query: 78  WKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYN-VKYQVVQKCDVSV 129
           WKVG+FITG+Y  H  CP  INFG      +G IV  N VKY     C VSV
Sbjct: 161 WKVGTFITGKYHLHVKCPAYINFG---NKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of CsaV3_3G037880 vs. TAIR 10
Match: AT5G06330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 124.4 bits (311), Expect = 6.6e-29
Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 18  KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVR 77
           +ITL + +   YQGHK+VNVWSPFV G SVPVAP+ +  L+QD ++GA+ML++ +DG+VR
Sbjct: 103 QITLPSPMLTTYQGHKEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVR 162

Query: 78  WKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQVVQKCDVSV 129
           WKVGSFITG+Y  H  C  +INFG+  A   G IV    KY + + C VSV
Sbjct: 163 WKVGSFITGKYHLHVRCHALINFGSSAA---GVIVG---KYMLTETCSVSV 207

[Close]

BLAST of CsaV3_3G037880 vs. TAIR 10
Match: AT5G22200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 18  KITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVR 77
           ++TL  ++P  YQGH +V VWSPF+ G++VPVAP++SS LN+D  AG ++L +KIDG VR
Sbjct: 105 EVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVR 164

Query: 78  WKVGSFITGRYQFHANCPVVINF-GAYPANGDGSIVQYNVKYQVVQKCDVSV 129
           WKVGS+++G Y+ H NCP  I   G     G        +KYQ+VQ+C V V
Sbjct: 165 WKVGSWVSGSYRLHVNCPAFITVTGKLTGTGPA------IKYQLVQRCAVDV 210

[Close]

BLAST of CsaV3_3G037880 vs. TAIR 10
Match: AT2G35960.1 (NDR1/HIN1-like 12 )

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-27
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 11  RLGFDYDK-----------ITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSELNQ 70
           R+G  YD+           ITLRT IP  YQGHK+ NVWSPFV G SVP+APF +  L  
Sbjct: 84  RIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGD 143

Query: 71  DRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPANGDGSIVQYNVKYQ 129
           ++N G + L+++ DG+VRWKVG+ ITG+Y  H  C   IN     A     + +  VKY 
Sbjct: 144 EQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG--VHVGENAVKYM 203

The following BLAST results are available for this feature:

BLAST of CsaV3_3G037880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651111.1	4.3e-70	100.00	hypothetical protein Csa_000985 [Cucumis sativus]	[more]
XP_004136510.1	3.7e-58	88.37	NDR1/HIN1-like protein 1 [Cucumis sativus]	[more]
KAA0043819.1	1.6e-56	85.27	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008442910.2	1.6e-56	85.27	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK25313.1 NDR1/HIN1-like p...	[more]
XP_038906208.1	1.0e-55	84.50	NDR1/HIN1-like protein 1 [Benincasa hispida]	[more]

BLAST of CsaV3_3G037880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN0	5.0e-29	53.57	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]
Q9SJ54	2.3e-26	44.96	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]
Q9FI03	3.3e-17	34.31	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]

BLAST of CsaV3_3G037880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB20	1.8e-58	88.37	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779770 PE=4 ...	[more]
A0A5A7TRJ4	7.6e-57	85.27	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DNV1	7.6e-57	85.27	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B6T7	7.6e-57	85.27	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103486673 PE=4 SV=1	[more]
A0A6J1G5B0	2.6e-49	74.42	NDR1/HIN1-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111450912 PE=4 SV=1	[more]

BLAST of CsaV3_3G037880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44220.1	2.7e-30	52.25	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G11660.1	3.5e-30	53.57	NDR1/HIN1-like 1	[more]
AT5G06330.1	6.6e-29	54.05	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G22200.1	1.3e-27	49.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35960.1	1.6e-27	44.96	NDR1/HIN1-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31415:SF107	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	coord: 17..128
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 17..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G037880.1	CsaV3_3G037880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism