Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA
mRNA sequence
AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA
Coding sequence (CDS)
AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA
Protein sequence
SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHGRKK
Homology
BLAST of CsaV3_3G028480 vs. NCBI nr
Match:
KAE8650833.1 (hypothetical protein Csa_017505, partial [Cucumis sativus])
HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG 60
SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG
Sbjct: 1 SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG 60
Query: 61 DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE 120
DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE
Sbjct: 61 DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE 120
Query: 121 HGRKK 126
HGRKK
Sbjct: 121 HGRKK 125
BLAST of CsaV3_3G028480 vs. NCBI nr
Match:
TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 117.9 bits (294), Expect = 6.5e-23
Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
LDQL+++ + QQQ++Q++MKY++ +V EKSTTTSD +GSSSK K
Sbjct: 61 LDQLSTKAETQQQRYQVVMKYMDNVVNEKSTTTSDLEGSSSKMK 104
BLAST of CsaV3_3G028480 vs. NCBI nr
Match:
KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
LD+L+++ QQQQ+Q++MKY++ V EKSTTTSD +G SSK K
Sbjct: 61 LDRLSTKADTQQQQYQVIMKYMDNFVNEKSTTTSDQEGFSSKMK 104
BLAST of CsaV3_3G028480 vs. NCBI nr
Match:
KAA0066078.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DL K+PA+E+ LS ++K V+RLNVQ DKQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLYKLPAVEDKLSTIMKTVERLNVQHDKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHG 123
LD+L+++ QQQQ+Q++MKY++ +V EKSTT+SD +GSSSK K +G
Sbjct: 61 LDRLSTKADTQQQQYQVIMKYMDNVVNEKSTTSSDLEGSSSKMKEVING 109
BLAST of CsaV3_3G028480 vs. NCBI nr
Match:
KAA0057242.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
Query: 8 LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ
Sbjct: 682 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 741
Query: 68 QMLMKNLDQLNSQVKKQQQQHQLL 92
Q LMKNLD+L+S+ QQQQ+Q+L
Sbjct: 742 QALMKNLDKLSSKADTQQQQYQVL 765
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match:
A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1)
HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23
Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
LDQL+++ + QQQ++Q++MKY++ +V EKSTTTSD +GSSSK K
Sbjct: 61 LDQLSTKAETQQQRYQVVMKYMDNVVNEKSTTTSDLEGSSSKMK 104
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match:
A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
LD+L+++ QQQQ+Q++MKY++ V EKSTTTSD +G SSK K
Sbjct: 61 LDRLSTKADTQQQQYQVIMKYMDNFVNEKSTTTSDQEGFSSKMK 104
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match:
A0A5D3BLG2 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00210 PE=4 SV=1)
HSP 1 Score: 113.2 bits (282), Expect = 7.7e-22
Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0
Query: 14 MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
MAKK++E FEA+E+E+ E+K DL K+PA+E+ LS ++K V+RLNVQ DKQ QQ Q LMKN
Sbjct: 1 MAKKHEERFEALEQEVSEMKKDLYKLPAVEDKLSTIMKTVERLNVQHDKQQQQHQALMKN 60
Query: 74 LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHG 123
LD+L+++ QQQQ+Q++MKY++ +V EKSTT+SD +GSSSK K +G
Sbjct: 61 LDRLSTKADTQQQQYQVIMKYMDNVVNEKSTTSSDLEGSSSKMKEVING 109
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match:
A0A5A7UN06 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00770 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
Query: 8 LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ
Sbjct: 682 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 741
Query: 68 QMLMKNLDQLNSQVKKQQQQHQLL 92
Q LMKNLD+L+S+ QQQQ+Q+L
Sbjct: 742 QALMKNLDKLSSKADTQQQQYQVL 765
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match:
A0A5D3D593 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00200 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
Query: 8 LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ
Sbjct: 715 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 774
Query: 68 QMLMKNLDQLNSQVKKQQQQHQLL 92
Q LMKNLD+L+S+ QQQQ+Q+L
Sbjct: 775 QALMKNLDKLSSKADTQQQQYQVL 798
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8650833.1 | 1.1e-54 | 100.00 | hypothetical protein Csa_017505, partial [Cucumis sativus] | [more] |
TYK17139.1 | 6.5e-23 | 60.58 | putative retroelement pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0036991.1 | 1.9e-22 | 59.62 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gyp... | [more] |
KAA0066078.1 | 1.6e-21 | 57.80 | transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 t... | [more] |
KAA0057242.1 | 1.0e-15 | 59.52 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D379 | 3.1e-23 | 60.58 | Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7T5W7 | 9.1e-23 | 59.62 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3BLG2 | 7.7e-22 | 57.80 | Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7UN06 | 4.8e-16 | 59.52 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3D593 | 4.8e-16 | 59.52 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |