CsaV3_3G028480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028480
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr3: 24906235 .. 24906609 (-)
RNA-Seq ExpressionCsaV3_3G028480
SyntenyCsaV3_3G028480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA

mRNA sequence

AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA

Coding sequence (CDS)

AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA

Protein sequence

SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHGRKK
Homology
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAE8650833.1 (hypothetical protein Csa_017505, partial [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG 60
           SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG
Sbjct: 1   SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQG 60

Query: 61  DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE 120
           DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE
Sbjct: 61  DKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKE 120

Query: 121 HGRKK 126
           HGRKK
Sbjct: 121 HGRKK 125

BLAST of CsaV3_3G028480 vs. NCBI nr
Match: TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 6.5e-23
Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
           LDQL+++ + QQQ++Q++MKY++ +V EKSTTTSD +GSSSK K
Sbjct: 61  LDQLSTKAETQQQRYQVVMKYMDNVVNEKSTTTSDLEGSSSKMK 104

BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
           LD+L+++   QQQQ+Q++MKY++  V EKSTTTSD +G SSK K
Sbjct: 61  LDRLSTKADTQQQQYQVIMKYMDNFVNEKSTTTSDQEGFSSKMK 104

BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0066078.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DL K+PA+E+ LS ++K V+RLNVQ DKQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLYKLPAVEDKLSTIMKTVERLNVQHDKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHG 123
           LD+L+++   QQQQ+Q++MKY++ +V EKSTT+SD +GSSSK K   +G
Sbjct: 61  LDRLSTKADTQQQQYQVIMKYMDNVVNEKSTTSSDLEGSSSKMKEVING 109

BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0057242.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 8   LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
           LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ 
Sbjct: 682 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 741

Query: 68  QMLMKNLDQLNSQVKKQQQQHQLL 92
           Q LMKNLD+L+S+   QQQQ+Q+L
Sbjct: 742 QALMKNLDKLSSKADTQQQQYQVL 765

BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23
Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
           LDQL+++ + QQQ++Q++MKY++ +V EKSTTTSD +GSSSK K
Sbjct: 61  LDQLSTKAETQQQRYQVVMKYMDNVVNEKSTTTSDLEGSSSKMK 104

BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++RLNVQ +KQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPK 118
           LD+L+++   QQQQ+Q++MKY++  V EKSTTTSD +G SSK K
Sbjct: 61  LDRLSTKADTQQQQYQVIMKYMDNFVNEKSTTTSDQEGFSSKMK 104

BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3BLG2 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00210 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.7e-22
Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 14  MAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKN 73
           MAKK++E FEA+E+E+ E+K DL K+PA+E+ LS ++K V+RLNVQ DKQ QQ Q LMKN
Sbjct: 1   MAKKHEERFEALEQEVSEMKKDLYKLPAVEDKLSTIMKTVERLNVQHDKQQQQHQALMKN 60

Query: 74  LDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHG 123
           LD+L+++   QQQQ+Q++MKY++ +V EKSTT+SD +GSSSK K   +G
Sbjct: 61  LDRLSTKADTQQQQYQVIMKYMDNVVNEKSTTSSDLEGSSSKMKEVING 109

BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5A7UN06 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00770 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 8   LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
           LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ 
Sbjct: 682 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 741

Query: 68  QMLMKNLDQLNSQVKKQQQQHQLL 92
           Q LMKNLD+L+S+   QQQQ+Q+L
Sbjct: 742 QALMKNLDKLSSKADTQQQQYQVL 765

BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3D593 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00200 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 8   LGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQ 67
           LGK KKM KK+ E FEA+E+E+ E+K DLQK+PA+EE LS ++K ++R+NVQ +KQ QQ 
Sbjct: 715 LGKPKKMEKKHKERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERVNVQNEKQQQQN 774

Query: 68  QMLMKNLDQLNSQVKKQQQQHQLL 92
           Q LMKNLD+L+S+   QQQQ+Q+L
Sbjct: 775 QALMKNLDKLSSKADTQQQQYQVL 798

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650833.11.1e-54100.00hypothetical protein Csa_017505, partial [Cucumis sativus][more]
TYK17139.16.5e-2360.58putative retroelement pol polyprotein [Cucumis melo var. makuwa][more]
KAA0036991.11.9e-2259.62ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gyp... [more]
KAA0066078.11.6e-2157.80transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 t... [more]
KAA0057242.11.0e-1559.52ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D3793.1e-2360.58Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7T5W79.1e-2359.62Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BLG27.7e-2257.80Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UN064.8e-1659.52Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D5934.8e-1659.52Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028480.1CsaV3_3G028480.1mRNA