CsaV3_3G028480 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA AGTTCCAACAAATTGGTACCTCTGGGAAAATCGAAGAAGATGGCAAAGAAGAATGATGAACATTTTGAAGCAATGGAAGAAGAGATCCAGGAAATCAAGAACGATCTGCAGAAAATACCGGCCATGGAAGAGAGCTTATCAGCATTGGTCAAGAACGTCAAACGATTGAATGTACAAGGTGATAAACAACACCAACAGCAACAAATGTTAATGAAAAACCTGGATCAATTGAATAGTCAAGTCAAGAAACAACAGCAGCAGCATCAGTTATTGATGAAATACATCGAAGAACTGGTTAAAGAGAAATCAACAACTACGTCCGATTCTCAAGGATCCTCCAGTAAGCCGAAAACGAAGGAGCACGGAAGGAAGAAA SSNKLVPLGKSKKMAKKNDEHFEAMEEEIQEIKNDLQKIPAMEESLSALVKNVKRLNVQGDKQHQQQQMLMKNLDQLNSQVKKQQQQHQLLMKYIEELVKEKSTTTSDSQGSSSKPKTKEHGRKK Homology
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAE8650833.1 (hypothetical protein Csa_017505, partial [Cucumis sativus]) HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 6.5e-23 Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22 Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0066078.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21 Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. NCBI nr
Match: KAA0057242.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15 Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23 Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23 Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3BLG2 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00210 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 7.7e-22 Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5A7UN06 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00770 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16 Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
BLAST of CsaV3_3G028480 vs. ExPASy TrEMBL
Match: A0A5D3D593 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00200 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16 Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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