CsaV3_3G028290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028290
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCopia protein
Locationchr3: 24761733 .. 24771886 (-)
RNA-Seq ExpressionCsaV3_3G028290
SyntenyCsaV3_3G028290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGTAAGTCTTTGCATATATCGTAACTAAGTTGTCTTTCACTTCGACTTCGCAAGCAGATTCTCCAGATCAAGCTGTGTGTTTCTCTCATTTTTTCAGTCATGCAACCAAGTTATTCTTTGCCTTTTCCTAGTCGAGTCGCGAGCTTACCTTCACTTCTTTAAGTCGTTTGCTTTTGGAGCTATCTTTTGGGTGAACTTAACGAGTTCTTGATTTGGATTTGTTGAAGGATATGCTGAAGAATATTCCCTCTCATTGTTTATTGACCAATGTTGTGTATTTATACAAGGGTAATTACCCAAAATAACTAAGCCTACTTTATTTACATTAACATCATTACCCAAATTAACTAAGCCTAATTTATTTACATTAATACCCTCCCTCAAACTCAAGGTGGTAGAGTAGCGATCAACTTGAGTTTGGTAAGTAAGTGACAAAATCGATTAGATGGCAAGGCTTTGGTGAAGATATCCGCAGGTTGTTCAATAGTAGAAACAGAACGTAAGAGGAGGGTGTTGCTTAAGAGGTGGTGACGAACAAAGTGACAGTCATTTTCAATGTGTTTTGTACGTTCATGAAACACATCATTGTGAGCAATCTGAATGGCACTACGATTGTCACAATGGAGGAGGGTAGGACCCTGTTGAGGGACACCCATATCGGCAAGGAGCCACCGAAGCCATATAAGTTCAGCTGTAGCATCAGCCAGAGCACGATATTCAGATTCCGTACTGGAACGAGATATAACACTTTGTTTCTTACTACGCCATGAGATGAGAGAATCACCTAAGTAAAAACAGTATCCTGTAGTGGATCGTCGATCAGTAGGATCCCCCGCCCAATCAGCATCAGAATATCCCGACAACACAAGGGAAGACTGAGATGAGAATTGAAGACCATGTCCCAAGGTGCCTTTGACATAGCGAAGTATGCGTAGAACAGCAGTGAAATGAATTGTTCGAGGAGCAGCCATAAATTGACTGACAATATGAACAGCATATGCAATATCTGGGCGAGTTACTGTTAGGTATATAAGACTGCCAACAAGTTGCCGATACAAGCTTGCATCGTCAAGAGGAACACCATCAAACGGAGTTAGATGGACATGAGGATCTAACGGTGTTGAAGATGTGGTGGAGTCTGTAATTCCTGAGCGTGCTATTAGATCAGATGCATATTTCGCTTGAGATAACAGATAACCATCTGAACGGTGAGAGACTTCAAGACCGAGAAAGTAATTGAGAGATCCAAGGTCTTTCATCTCAAAATGTTGACCAAGATATTGTTGTAGGTCGGATATGGCCTGTTGATCATTACCAGTAATAATCATATCATCAACATAAAGAAGGAGAAGAACAATACCATGAGTTGTCTGTCGTGTAAAAAGGGCATTGTCGTGAGAGCTGGAGGTAAATCCAAGTTGAGTAATGGTGGAGCTAAACGTGGCAAACCAAGCTCGTGGAGCCTGTTTTAGACCGTATAGAGCGCGACGAAGGAGACACACCTTGTTGGGAGGAGGAGAAGTTCCCTGAGGTGGCTTCATATACACTTCTTCAGATAGGTTGCCGTTAAGAAATGCATTTTTGACATCCATCTGAAAAAGAGGCCACTGTTTGGCAGCAGCAACAGCTAACAAGCTGCGAACAGATGTCATCCGGGCAACAGGGGCAAATGTTTCTTCATAGTCAATCCCATATTCTTGTGAGTATCCTTTTGCAACAAGCCGAGCTTTATAACGTTCAATAGTTCCATCAGAGTGAGTTTTGATTTTGTAAATCCATTTGCAACCAATGGGTCTTTTACCGGGAGGTAAATCAACATAGTCCCAAGTGTGCGTCTTTTCAAGAGCCTGTAATTCTTCATCCATTGCTTTCTGCCATACTGGGTTAATACTGGCCTCTTGATAAGAGGTGGGTTCAACAAGGGAAACAATGGTAGAAAAACAATGGTAATCAGTGAGATGAGGGGGAGGTTCTCTTACCCGGGTAGAGCGACGAAGAGGAGTAGCAGGTGGCGATTCAGGAACATCATCGGAGACAGACGGTGGATCCAGATTTGCAGTAGCAGGTGAAGATTGTGCAAGCTCAGTATCCAAGGTGGGTTCAGAGAGAGGAAAAAGGTCAACAGATGTGTTTGTAAAGAAAGATTGAGGACTAGAGAAGGAGGTGTGGAAGGAGGACAAACGAGAGAACATAGTGTGTTCCCAAAAAGTGACATGCCGAGATATCCGGAGTCGGTTGGAAAGAGGGTCCCAACAACGAAATCCTTTGTGTTCGGTGCCATAGCCAAGGAAGCAACAGAGACGGGCACGTGGTTCAAGTTTATTGTGTTCATGAGGATGTAACAGAACGAAGCAGGCACTACCAAAAACTTTGAGTTTAGAATAGTCGGGAGAAATACCATATAGTTTTTCGAACGGAGAGGTATTTTGAAGGACAGAGGAAGGGAGACGATTGATTGTATATACTGATGTAAGGGCAGCTTCACCCCAGAATTTTTCTGGACAAGAGGCAGAAAGAAGGAGGGCACGTACTGAGTCAAGAATGTGACGATGTTTGCGCTCAGCACGTCCATTTTGTTGAGAGGTATGAGGGCAAGAGCGCTGAACAATAGTGCCCTGTTGGGAAAGAAAAGAAAGAAGGATGGAATCTTTATATTCCAAAGCATTATCAGTGCGAAGAATTTTGATGGGAGAGGAAAATTGAGTGCGAATCATGTTAGCAAACTCAATATATGTGCGAGATAATTCAGAACGATGTTTTAGAAAGTAAATCCATGTAAATCGAGAGTAGTCATCAATGAATAAAACATAGTAGCGATAACCATGAACAGTAGTAATTGGGGCAGGACCCCAAATATCAGAATGCACTAAATCAAAAGGTTTATCACAATTAGAGATGGATTGAGAAAAAGATAAGGCAGGTTGTTTAGCAAGTTTGCAATTCAAACAATTAAAAGGAACAAATTTAGTAAGATTAGTCAAATTGTTAACAGAAATTAAATGACGAAGTTTTTCAGAGGAAGCATGACCAAGACGAAGATGCCACTGATATGTGTCAGAATCAGTGACCGAAGCAGAGATGGAAGAAGGAGATGAAATCCGAAGTGATGTGAGCTCAAACAATCTTCCCACTTTGCGACCCGTTCCAATCGTCTGTCCCGTCTGCGGATCCTGAACCTGACAACCATTGGGAGAAAATGAAACATTTAAGCCCAGATCACATAATTGACCAACAGACACTAGATTAAAGGTCAGGTTAGGAACACAGTAAGTATGGGGAAGATGTACACTGGGAGTATCAATGGTACCAGTATGAGAGATGTTCATACAATTACCATCAGCAGCATAAATAGGAGGTAAAGATTTTGTAGGGCTAGAAGTAGACATAAGAGAAGAGTCAGAGGTCATATGATTACAACAGGCAGAATCAAGAAGCCATCGATTACCTGATGAAACAGCCAGAGCGGAGGATGATGAAATTAGTTGATTCAATAAGCTCTGAAGATCACTTATCTGAATGAGGGATGAATCATCCGAGGTCGCAGCAACAACAGATGAGGAACCATGTTTGGTAAAAATTTTCTCTTTTGTGGAAGTGCTAGGAGGTCGGGGTGGTCTGGTAGGGCAGTTATCCAGAATGTGGCCATGTTTATGGCAGTACCTGCACTCTATTTTAGGACAGTTACTAAATTTGTGACCAGAGAGCTTACAATTCTTACAAAACATATTTGCGGCTCTGTTGGGAGTGTATGTGCTAGCAAGGACAACATCAGATTGTTTAGTAGAGTTGATGCCAAGACGCTTTTCTTCAAACAGAATTTCTTGAATAGCTGCATCTAATGAGGGTAAGGGATTCCGGTGTAGTAAAGCAGCTCTAACAGATTCATATTCTGGACGTAATCCCATAAGGACTTTAATAAGGCGAAGATGATCTTTGCTGATGTTCGCTTGGTCAAGTTGAGTCCAAATGGGTTGAAGAACTGCCAAATATTCATTAACAGACTGACCAATATCTTGATTTAGATTTACAAGTGTACTGTGCAGTTGGTAATAATGGGCTAAACCAATAGACTTGAAGCGTGTAGACAAAAAATCCCATAATATTTTAGCATCATCAAAGGCATCAAACTGTGCATGTATAGCGGGAATAGAGGTGTTACCAAGCCAGGTGATAATTTGATGATTTTTACTGTCCCAATCTTCGAGACGTTCAATGAATGTGTTATCCCCTTCCTTTGCAGTTGGTTTGGTGATGTCGCCAGTTACAATGCGCCATAGTTTTCTTCCAATAAGAAAACTTTTCATTTGATTTGCCCATGTGATATAATTTGTACCATCAAGTATTGTAGAAATGGGTCTAAAGATATGGTCTCTCTCCATTTTGATTTGAGTTTTACTGTATTTGGCGGCTGAGATTTGCCTTGACGGAGACAGAGATTGCGCAGCAGGTCTTTACGAACGGAGAGAAAATGAATGGGCACGGCGACAGATCTAAAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGAAGAGCGGCGGCGAAGGAATGGGCGGCGATGCTTCACGAACCGACCGACGATTGCAGCGACGGATCTGGGTTGCGGAGCGGCGGCGAAGGAATGGGCACGACGACAGATCTAGAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGAAGAGCGGCGGCGAAGGAATGGGCGGCGAAGCTTGAGACAGATCGGAGCGGAACCAGCTTGAGACAGATCGGAGCGGAGATGGACACCTGAGACAGATCGAGATGTGGCGCGACTATCGGAGCTGTAAATCGGAGACGACTGGCGCTTCGCGGATGAAGACAGATCGGAGCTGCGACTAATCGGCGCGACGAGGATGACGGAGACGGTTCGAGATGTGGCGGAACAGCTGCGAGGCGCGACGAGGATGATGGAGACGATTCGGGACGCAGCTCTTCCTGGAGGTATCGAGACGATTCGGGATGGAGGCGTTCACGGGCGGCGGCGGCGACGGCGGCGGCGATTGAGATGGAGCCTCAAAACCCTAGCTCTGATACCATGTTGAAGGATATGCTGAAGAATATTCCCTCTCATTGTTTATTGACCAATGTTGTGTATTTATACAAGGGTAATTACCCAAAATAACTAAGCCTACTTTATTTACATTAACATCATTACCCAAATTAACTAAGCCTAATTTATTTACATTAATAGGATTTAAGATACACCTAACAAGAATTAATTATTAGTGTTAGTTATTGGTCATGGTTATAATTTTGTTAACGTTAGGATTAGTTTAATTAGATTTTAATTTGGATTTTTCAATTGAAGGTTAATGGGCTCAATTGGAAGAATTAAGCAAGGTTGAATTGGTTGCAACCTCAACTTTGGGTTGATTGAAGATGATTTTTGGGTCTATATTCAATCGTTAATTTTATTAAGTTATTAAATTGGTTCCTTGTATGTTTAGGATTGGGTTCATTGATTTTTGACTGTCAACCAGGATTCTAGCTAATTTTGAGGTACTACTATTAGATCTTCAAATTAAATTTTAAGAGTCGCCTGTAGTTGTGATTACGCATTGATGGTAGTTGAAAATGCATAATGAGATGTTGTAGTTGATGATTGATATTATGTTGATGATGATGACTGATATTATGTTGATGATGACGACTGATATGTTTATAATGTTATGATGCATGATATATCAATTACATGATTAAAGGTGTTGTGATTGATATTCATGTCATGTTTATGATGTTTATTATGTTACATGCCTTACTCTGGTGTGTCTGTTAACTTTTTTTGTTGAGTTTTTACCCCACATGTATTATGATTCTGTCTATGGGGTCACTTGTACGATTAGGGATGTTCCATCGGGATAACTTGCACGATTTATGGGTGTACCTATGGATCACATGCACAATTAGGGGGCAATTTTATTGTATACAAGGTCACTCACATGACTAGGGGTGTTTCAACGGGACCACTCACACGATTAAGGGTGTACCTATGTAACATATATAGATATGTTTAGGAGTGTGTATGCACGATCACTCACACGACTAGGGGTGTTTCTATGGGTCACTCACACGATTAGGAGTGTTCGTATGATCTCACTCGCTTAGGTGTGCTTTATTGGACACATGACACTATTATTATGTTTCTAAAGAAAGTTAACCGATCATATCATCTAGCAGGACTAGTAGTGGGTCTCTTATGGGTATATTTTATATACTTTCTTTTCTATGTTTAATATAAAATTTTTAGTTTCCCCATTTTCAAGAAAATTTAAAGTATTAATTGTCTTTTGAGTAATAACTTTAGTTTAGTTTGAAAGTTTAGGTCGTTACAATTAATCTGGAACGCCCCAGGCCTAGGATTTGGAATTTGGATCCCTGACATTCCCTTCCATTCAATGTGACCTGCAACATCATCCTTACTGTCTTAAAAACTTATTAGAGTGAAAGTTCTCTCCACAAACCAACATGAGTGTCCTTTCAGCATGTTTTGTCCTCACTCACATGCATCATAGAAAAATTATCAGGTCACCCAACATAGAATTGTTCTAAGCTAAGTGAGCACGCTTAAGTTTGGAGATCCTATGATCATGGAGGTCAACTAACATAGAATTGCTCCAAGCTAAACATGCCTAAATTTAGAGTTTCTATGATGAAGCCACCAAAAAGGAAGGTGCACATTGTTGGTATAGGTAGTAACTTTTAATTCTTTTAAATATTTCTTAAGATTACTTTCATGTGCTAATTTCATGTTCTTAGGATCCCTCTCATTCAAATGTGATACATGTTCATTCGTATCCCCTCTCCTAAACTCGAAGCGTTACAGTTTTAACCGATTCAATAAAGAGTTTGCTGGAAATATAAATCAAAATAAGGGGCATAACTCAATTTTGACTAGAAATTCAAACCCTCATACTTACGTTACAACCCAAAAGTCTAATCCATTGGCCACACCAGAGACAGTAGTTAATACAAATTGGCATGTTGACAATGGGGCAACGAATCATGTAACATCTGACTACTCAAACCTGTCAAATATCTCTGAATATTCAGGTATTGAAAATGTTGTTGTTGGTAATGGAAGTAAACCGCAAATTACTTGTGTGGGTAATGCAAATTTAACTCATGGGAAAAGTAGTTGAAACTAGAAAATATTTTATGTGTGTCTGACATTACAAAAAATCTAGTTAGTATGTCAAAGTTATATCAAGATAATGATGTATCTCTTGAATTTCATGGTACTTGCTATTTTGTAATGGCCAAGGATACATGTCAAATTATGTTAAAAGGAACACTTAAAGATGGCCTCTATCACCTTGAAGGTGTTGCAGTGAAGTCAGTTGGTGAGTTGGAGAACAATGAAGGTAGAAAACGACAGTTTCAACATATAAATAACAATGCATCAATATTAATGTTGTCTAAAACAACCAATAGTAGTGTTGTTGCTTCTAAAACTGTCGGACATAGGTGTGTCTAGGTCACCCATCTGTGAAAGTTTTATACTTTATAATCAAATGTTGTAATCTTCCTATTAATGACAATGAAGAACTTATTTTCTATATTCCTGTCAACTTGGAAAAGCCCATAATCTACCATTTAATGTCTCTCAAAATTGAGCAGCTAATCACTTTAATTTGGTACGCTGTGATTTATGGGGATTAGCTTCACTTCATTTGATGGTTATCGATATTAAATCCTATTTGTTGATGACTTTAACAGTTACAATCGAATCTATCCTCTTAAAAAAAGAGTGGAGCCTTTGAAGCCTTCACACATTTTCTTACATATGTGAAAACCCAGTTTTAAAAAATACTCAAACTCATATTTTGGCCGAAACAAATCCAAGTAATCACCCAAATACACCTATTTCCTTACTCATCTTATGATAACAAGGGCCAAAGCTGACATCTTCAAACTAAAAGTTCTAACTTCTACCTTCACTGTTGATTGGTCCTTCACTGAGCCAACACGAGTAAAATATGCCTTGGCTACACCATCGTGGAAGAAGGCTATGGATGATGAGTATATAGCCTTGGTAAAAAAATAAAACCTGACATCTTGTTCCACCCTCTCTCACCTTGAATGTTATTGATAACAAGTGGGTTTTTAGAATAAAAAGAATGTTGATGGTATTGTTCAAACATCTTGTTCCACCCTCTCTCACCTTGAATGTTATTGATAACAAGTGGGTTTTTAGAATAAAAAGAATGTTGATGGTATTGTTCAAAGATACAAGGCTCGTCTCATATCCAAGGGGTTTTATTAGACTCGAGGTATTGACTTCTTTGAAAATTTTGGTCCCATGGTTAAGGCTTCAACCATTTGGGTGGTTCTCAGCTTAGCCGTCTCTAAAGGTTGGCAGTTGCGACATTTAGATTTTAATAATGCCTTCCTCAATGGTCACTTAACAGAGGATGTTTATATGGCACAACCCTCTGGGTATGTTAATCCTACCTTTCATCACTATGTGTGTAAATTGGATAAAGCAATACACGGCCTCAAGCAAGCACCTCAAGGATGGAATACAACACTCACTATTGAGTTATTACAACTTGAGTTAAAAAGTTCAAGGTAAGATTCCTCCCTTTTATATTTCGAAACAACACTTCCATCATATTGTTTCTGGTTTATGTTGATGATGTGATAGTCCCTAAGAACAATTTTGTCAGGATTGGTAAACTGATAAAATCCTTTGATGCAAAATTTTTCCTAAAAGACTTGGGCCATCTACACTTATTTCCTTGGAATTCAAGTTCACCATCTTGAATTAGCGGATCTACTTTACAAGCTTCAACTTACTGGTTTAAAATCAACACCATATCTCTCCGTGTTTTTGGCAAACACTTGTCTATAAATGATGGCACACCTTTAAATGACCTGTTCATATATCGAAGTACTCTGGGAGCACACTAATATCTTACCAGCATTAGACTAAACATATAATATATTAAATCATCTAAGTCAGTTTCTGCAAAAACCAACTGGTCTTCATTGACGTGCAGTTAAACGTGTTCTGATCTATGTTAATGGCACAAATAATCACGTTAATTTATTTCAACGAAACACAAATTTGTCTATTACTGTATTCTCTGATGCATATTGGGCTTCTAATATTGATGATCTTAAGTATGTAGTTGCATACTGTGTTTTTATAGGCAACAACCTAGTTTCTTGGTCCTCTAAGAAACAAAATATTGTGGCACGATCAAGCACTGAATCTGAATATCGAGCTTTTATCTCATGTTGCATCTGAAATCAGTTTGCTCAAAGAGTTGCTCTCTAAACTTGCTAAATTTAATTGTTCTAAGCCTATTTTGTAGTATGATAACTTAATTGCAGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAAAATTACCACTCTCAATTGCCATGTCACAACATTTGAGAATATTCAATTTGTTGAGAATTAGTTGATTCAATAACTCCTCAACCAATCATTTACCAACACTTGTATTATTTACATTGGTTTATTTGTAATTATTATTATTTCTTCTTTCCCTACTCGTAGGGTTCTGCTTGTGGACGAGATTTCCTAATCTCTCTCTCA

mRNA sequence

TGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAA

Coding sequence (CDS)

TGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAA

Protein sequence

CALPQPSSSFLFNFTLSVPPHRFVVIEDNHKKRFCPSKSLPSLRSYHASRAGVSQLWSSTAMYLHCCTLLVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSSPSPKSI*
Homology
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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: KAE8650825.1 (hypothetical protein Csa_017512, partial [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 5.4e-109
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   CALPQPSSSFLFNFTLSVPPHRFVVIEDNHKKRFCPSKSLPSLRSYHASRAGVSQLWSST 60
           CALPQPSSSFLFNFTLSVPPHRFVVIEDNHKKRFCPSKSLPSLRSYHASRAGVSQLWSST
Sbjct: 1   CALPQPSSSFLFNFTLSVPPHRFVVIEDNHKKRFCPSKSLPSLRSYHASRAGVSQLWSST 60

Query: 61  AMYLHCCTLLVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHF 120
           AMYLHCCTLLVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHF
Sbjct: 61  AMYLHCCTLLVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHF 120

Query: 121 VCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHI 180
           VCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHI
Sbjct: 121 VCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHI 180

Query: 181 SNTHSSSPSPKSI 194
           SNTHSSSPSPKSI
Sbjct: 181 SNTHSSSPSPKSI 193

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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: TYK13717.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-26
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 101 LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
           L  N +FHARTKHIEI VHFV DQVLR  LEVQYIPS+DQL D L KP T+SHF  LRSK
Sbjct: 476 LQPNLVFHARTKHIEIDVHFVRDQVLRSALEVQYIPSSDQLADCLTKPLTNSHFHYLRSK 535

Query: 161 LGIIQLLSHLRGNIREKCHISNTHSSSPSPKS 193
           LG+I+L S LRGN+RE CHISNTH SS +  S
Sbjct: 536 LGVIELPSRLRGNVREGCHISNTHGSSTNATS 567

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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: KAA0045871.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-26
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 101 LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
           L  N +FHARTKHIEI VHFV DQVLR  LEVQYIPS+DQL D L KP T+SHF  LRSK
Sbjct: 630 LQPNLVFHARTKHIEIDVHFVRDQVLRSALEVQYIPSSDQLADCLTKPLTNSHFHYLRSK 689

Query: 161 LGIIQLLSHLRGNIREKCHISNTHSSSPSPKS 193
           LG+I+L S LRGN+RE CHISNTH SS +  S
Sbjct: 690 LGVIELPSRLRGNVREGCHISNTHGSSTNATS 721

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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: TYJ96769.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-22
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 70  LVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDV 129
           L+E L I Q+  P       SV       GALATNP+FHARTKHIEI VHF+ DQVLR V
Sbjct: 131 LLEELHISQSRKPVLWCDNISV-------GALATNPVFHARTKHIEIDVHFIRDQVLRGV 190

Query: 130 LEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSS 188
           LEV+Y+PST+QL D L K  THS FQ LRSKLG+I + + LRG++R K       +SS
Sbjct: 191 LEVRYVPSTNQLADCLTKSLTHSQFQLLRSKLGVICVPARLRGDVRSKDESDEASTSS 241

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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: KAA0051133.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-22
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 70  LVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDV 129
           L+E L I Q+  P       SV       GALATNP+FHARTKHIEI VHF+ DQVLR V
Sbjct: 131 LLEELHISQSRKPVLWCDNISV-------GALATNPVFHARTKHIEIDVHFIRDQVLRGV 190

Query: 130 LEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSS 188
           LEV+Y+PST+QL D L K  THS FQ LRSKLG+I + + LRG++R K       +SS
Sbjct: 191 LEVRYVPSTNQLADCLTKSLTHSQFQLLRSKLGVICVPARLRGDVRSKDESDEASTSS 241

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BLAST of CsaV3_3G028290 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-09
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 100  ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
            ++A NP  H R KHI+I  HF  +QV  +V+ ++YIP+ +QL D   KP   + F  LR 
Sbjct: 1337 SIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRD 1396

Query: 160  KLGIIQ 166
            KLG++Q
Sbjct: 1397 KLGLLQ 1402

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BLAST of CsaV3_3G028290 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.6e-09
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 101  LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
            L  NP+FH+R KHI I  HF+ +QV    L V ++ + DQL D L KP + + FQ   SK
Sbjct: 1398 LCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457

Query: 161  LGIIQL 167
            +G+ ++
Sbjct: 1458 IGVTRV 1463

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BLAST of CsaV3_3G028290 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-08
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 101  LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
            L  NP+FH+R KHI +  HF+ +QV    L V ++ + DQL D L KP +   FQ    K
Sbjct: 1381 LCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRK 1440

Query: 161  LGIIQLLSHLRGNIR 176
            +G+I++     G +R
Sbjct: 1441 IGVIKVPPSCGGVLR 1455

[Close]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match: A0A5D3CP94 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002430 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 101 LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
           L  N +FHARTKHIEI VHFV DQVLR  LEVQYIPS+DQL D L KP T+SHF  LRSK
Sbjct: 476 LQPNLVFHARTKHIEIDVHFVRDQVLRSALEVQYIPSSDQLADCLTKPLTNSHFHYLRSK 535

Query: 161 LGIIQLLSHLRGNIREKCHISNTHSSSPSPKS 193
           LG+I+L S LRGN+RE CHISNTH SS +  S
Sbjct: 536 LGVIELPSRLRGNVREGCHISNTHGSSTNATS 567

[Close]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match: A0A5A7TWM4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004070 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 101 LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
           L  N +FHARTKHIEI VHFV DQVLR  LEVQYIPS+DQL D L KP T+SHF  LRSK
Sbjct: 630 LQPNLVFHARTKHIEIDVHFVRDQVLRSALEVQYIPSSDQLADCLTKPLTNSHFHYLRSK 689

Query: 161 LGIIQLLSHLRGNIREKCHISNTHSSSPSPKS 193
           LG+I+L S LRGN+RE CHISNTH SS +  S
Sbjct: 690 LGVIELPSRLRGNVREGCHISNTHGSSTNATS 721

[Close]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match: A0A5A7U5H7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00810 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-22
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 70  LVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDV 129
           L+E L I Q+  P       SV       GALATNP+FHARTKHIEI VHF+ DQVLR V
Sbjct: 131 LLEELHISQSRKPVLWCDNISV-------GALATNPVFHARTKHIEIDVHFIRDQVLRGV 190

Query: 130 LEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSS 188
           LEV+Y+PST+QL D L K  THS FQ LRSKLG+I + + LRG++R K       +SS
Sbjct: 191 LEVRYVPSTNQLADCLTKSLTHSQFQLLRSKLGVICVPARLRGDVRSKDESDEASTSS 241

[Close]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match: A0A5D3BCJ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00650 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-22
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 70  LVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDV 129
           L+E L I Q+  P       SV       GALATNP+FHARTKHIEI VHF+ DQVLR V
Sbjct: 131 LLEELHISQSRKPVLWCDNISV-------GALATNPVFHARTKHIEIDVHFIRDQVLRGV 190

Query: 130 LEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSS 188
           LEV+Y+PST+QL D L K  THS FQ LRSKLG+I + + LRG++R K       +SS
Sbjct: 191 LEVRYVPSTNQLADCLTKSLTHSQFQLLRSKLGVICVPARLRGDVRSKDESDEASTSS 241

[Close]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match: A0A6J1DM39 (uncharacterized protein LOC111021822 OS=Momordica charantia OX=3673 GN=LOC111021822 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 88  PPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNK 147
           PP +       GALATNP+FHARTKHIEI VHFV D VLR  LEV+Y+PS DQL D L K
Sbjct: 171 PPIIWCDNISAGALATNPVFHARTKHIEIDVHFVRDHVLRGALEVRYVPSADQLADCLTK 230

Query: 148 PFTHSHFQCLRSKLGIIQLLSHLRGNI 175
           P  HS F  LRSKLG++ L + LRG++
Sbjct: 231 PLIHSQFHLLRSKLGVLDLPARLRGDV 257

The following BLAST results are available for this feature:
BLAST of CsaV3_3G028290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650825.15.4e-109100.00hypothetical protein Csa_017512, partial [Cucumis sativus][more]
TYK13717.11.5e-2670.65putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0045871.11.5e-2670.65putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYJ96769.18.5e-2255.08putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0051133.18.5e-2255.08putative mitochondrial protein [Cucumis melo var. makuwa][more]
BLAST of CsaV3_3G028290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P041465.0e-0943.94Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW26.6e-0942.42Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.5e-0838.67Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CP947.2e-2770.65Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TWM47.2e-2770.65Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7U5H74.1e-2255.08Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BCJ64.1e-2255.08Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1DM395.0e-2060.92uncharacterized protein LOC111021822 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
BLAST of CsaV3_3G028290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 100..161
NoneNo IPR availablePANTHERPTHR11439:SF338GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 100..161
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 100..148
e-value: 6.74525E-19
score: 76.7381

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028290.1CsaV3_3G028290.1mRNA