CsaV3_3G027860 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G027860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 24322332 .. 24323244 (-)
RNA-Seq Expression	CsaV3_3G027860
Synteny	CsaV3_3G027860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTGTTGGGTTATTGGGCAATACTATATGTAAATGTGAGGCTAACACAACCAGTGTTGCTGGATTAGATCAATTGCCTTATGGGAATTGGGTGAAAGTTTCGTTGGGGAGAAAGAGGTTGATTGATGGTAAATCTATATGGGAGGCAAGCTAGCGAAGTAGAGGAAAAGGGGAGGATGAGGGTCGGGGTGGAGAAACAACAAGGGGTGAAACAAGTGGTCGTGTGAGGGTGATTGACGTAAAGGTGGGGTGAATTGGGGAGTGAGTGAAGAAATGAATAATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGAGAGAGAGGAAAAAAAGGAAGGAAAGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAATAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAATAATGTTAATATGACTGTAACGGTGGGTGCTCAAAATGAGCCCCACCGACAACAATGAAACTCATATGCTGGAAAGCTCGGGGCATGGAGAGCTTGAGAGCATTCAAAGGTCTCAAGGATATTATGGTCGAAAAAAATTCCCTTATATTGTTCATATTTAAAAAATTATTGGTGCATGTAGATTGAAATATATTAAAAGTCATTTCAATGTTGATGAGTGCTTTACTTTTGATGCTATTGATAGAAGTGGAGGTTTTGGTTTACTGTGGGCT

mRNA sequence

ATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGAGAGAGAGGAAAAAAAGGAAGGAAAGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAATAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAA

Coding sequence (CDS)

ATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGAGAGAGAGGAAAAAAAGGAAGGAAAGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAATAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAA

Protein sequence

MKGQRKGEGGKKEITSHEGERGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEESKPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN*

Homology

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BLAST of CsaV3_3G027860 vs. NCBI nr
Match: KAE8650803.1 (hypothetical protein Csa_017586 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGQRKGEGGKKEITSHEGERGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES 60
           MKGQRKGEGGKKEITSHEGERGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES
Sbjct: 1   MKGQRKGEGGKKEITSHEGERGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES 60

Query: 61  KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN 120
           KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN
Sbjct: 61  KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN 119

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650803.1	3.8e-57	100.00	hypothetical protein Csa_017586 [Cucumis sativus]	[more]

BLAST of CsaV3_3G027860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G027860.1	CsaV3_3G027860.1	mRNA