CsaV3_3G027590 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAAACCATCAATCTGATACAGCTGACCAAGATAAACTCGAACCTGATACCTTCTGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATGTACCCTCTCCTCCCCATAATTCACAGATATCTGGAGCTTCACCCCCATTTAGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAGGAAAAACTGAAGACATTGCTCAGGCAGAGTGTAGTTACTCTTTCGAAAGAAGTAAATGAGGTATACTTGGGGTACAAAATCTTGGTTGTCGAGTACAACCTAGCACCGGGCTTGTTATTTGTTTGATAATTTAATAAATATGTTATGAATTGTGGAGTACAGTCCACTCCATCTTCTTAGTTATGTGTTGAACTCAATTTAGCACTTATTAAACAAGTAGAAACTTGTTTCTAAAGCATTATGTATTAAAGCAGAACTGGAAAATTATTCTTTCAGCATTTAATTGGCACCTTGCTATCCTGATAGATATGATCAGTATTCTTGAAGTTGTTTCTAATTGTCATCCTTTCGAAAAAGAAAATGAAATTATATGGATTTACTTCATCAGAGCTTTTTTTTTTTGTCATTATGGCTGGAACGTACCCCTCGTATCTTTGATGACAAGGTCACCTGTTTTAACAATATATATCACTTTCTTGGTGTAAATTTTACCCTCTCCTTAGCTCTTACAGTCTTCTCTTATTGCCTTGTACAAATGTTTCTTGCAATTCTTTTGACGCATAGTTTGCCCTCTTTTGTAATACCATCTTATCATGAAAAATTTCTATGTTTCTCATAAAAGAAAAGAATTAGGAAAGAAAAAAAAATTGTGAAGGAAGGAGAACTGCCAAAGATCTAAATATTTTTTCTAGCTACTTTTGTCTTCTTTTTTTAACCTTTGTTAACTGGATGAATGGATTTTCAATTACTGTTGTTGCTATTGTGCTGCAGATGCTTGAGCCTGCTCGATCTACCCAGCGCTTGAAGTCATATTTGAGATCCAAAAAGAATTTGGAAAAAGTGGCTATGAATAATGTGAAGCAAGCTCCTTTTAAGAAACTCAAATCCTTATCCTCTTCAACCGGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATGATGGTAAAGCTTGATATCTACAGATGCATTTTGATTTACAGTAGTAGTTAACAGTTTAGTGAAAGTGAACTGATGTATCTCTTCCATCTTCTTGTGAGTTGTAAAGTACCTTGGGTGAATGGAATCTTTCTGGATGACCTGAAATATCCTTTCACTCAATAAATGAAATCTAAATTCATACTGAAATTCATACTTTTTGTTTTAGAGTCATAGGTTGGTCATTTTTTTTTTTTTGAGGTTTAAGTGCAAATATTTTTAAATAAGAGAAGTGAGCAGTTTGTTTGGGAGAAGTCTAAAGGTGGATGTTGTCTTGGGTTTTTAAATAAATATTTAGGATATTTTTCATTAGATTAATAGTAATGAATGATTAGGATAGTGGTTTCCAAAGAAAAGAAAGCTGGTAGGTTTTAATATGAAATTATGGTTTGGTCATTTGGTATGCAATCCATAAAGCTCGAGTTGATTTTTCTCTCAAATGCCAATTTCTTAGTTCCTCTCATTCCAACATTCCTTTTAGATTGTTGGTACCTTAATTCAAAACTGACATTTCAGGGATGGGGGGTTGCATGCTTCTGACATTCTATTTAAATTTTTGGAACCATTTGGCATGCTGTTCAACATCTTGTTGATCAGGTTGCACCCCATGATTCCATATTATGATCTTTCACTAATCAGAAGAAAGAAAATGGTTTTCTACCTCCCCTCTACTGGACTTTAATTAGTTGTCAATGGTAGAAATCCCTGACTTTGAGCAAATTTGACAAAACTATGTGTCTTATGTGCTAAGAAAGAAGAAAATAGTGGATCAAGAAAATTTGTTTTAAGTTGATGTAAGTTTTCATTTTTCTTCATTAGAGGCAATTGAAGTGTTTCTCATAAGCATAACAGTGCATGGTAATGGTTTAGTTTTTTTGTAGACTTCAAATTTTTATATTAGTTTTGCTTATCCTTCTCTCTTTCATGCCAGATAGATGATGAATTGCAGTTTTTTCTAGATAATTATAGCGAGCAGATTGAAGACGTAGTTGCAAAATTTTCAAATGATCTATCTGGAACAGTAATATTCTATTACCCCTTCTCCCATTTCTCGTTGATTTGTATTGCATGCGCATCCAATTGCTTTCAGTAATATGTAATGCAATTTTAATACTATTATTACACTACTTTTTTTTACTTTGACTGCTAATTAACATCAAATAATGGATTGTCAGCTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAATTTCAGGTATGGCATCAAGTCGTAGTGAGAGAATTAGAGACAGAGGGAGGGAGGAAAAAACAGACGATTTTAGACATATCATGGCGGTGTCCCAGCATGTTATAAATTGTAACTTTGAAGCCAGCTTACCTTTATTCCTCTTGTGAGAATATATTGTGCTTGAATAATGTAGTCAATCACTATATTGCCTCTCTGGTTCTTTTTATTATATACAAAATTTGGTAAATCTGCTAAACTTTTTTCTGTTCAGAAATTTTGTAAAAGTATCAACTTGGACGTTTTTTTTTTATTAAATGGGTACCAGGAACCAACTGTTTATCTTCCAGACTATATTTATCTTTAAGTGGCCCAAATGAGTCATTAACTTTCTTTTTTTATCTACCTAGTTAATTATTAGCTTTCATTTCAGGCCTATGACCTTCAAGGAAAAAGAAGAGCTTCAGAAATTGATTCAGAAGCTTCCACCAGAAAATATCAGGCGTGTTGCAGAAATTGTCATCCAACATAGGACCGATAAAACAGATCTGTCTGGTGAAATCCATATTGGTTTGGATAAAGAGGTGAGTGAAGCAGCGCAGTAATATGCATGGAATAGTTAACATAGACTGAATCTATTTACTTATTTATTTTGCAGAATAACACTACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTGGCATCAAAATGA ATGTCAAACCATCAATCTGATACAGCTGACCAAGATAAACTCGAACCTGATACCTTCTGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATGTACCCTCTCCTCCCCATAATTCACAGATATCTGGAGCTTCACCCCCATTTAGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAGGAAAAACTGAAGACATTGCTCAGGCAGAGTGTAGTTACTCTTTCGAAAGAAGTAAATGAGATGCTTGAGCCTGCTCGATCTACCCAGCGCTTGAAGTCATATTTGAGATCCAAAAAGAATTTGGAAAAAGTGGCTATGAATAATGTGAAGCAAGCTCCTTTTAAGAAACTCAAATCCTTATCCTCTTCAACCGGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATGATGATAGATGATGAATTGCAGTTTTTTCTAGATAATTATAGCGAGCAGATTGAAGACGTAGTTGCAAAATTTTCAAATGATCTATCTGGAACACTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAATTTCAGGCCTATGACCTTCAAGGAAAAAGAAGAGCTTCAGAAATTGATTCAGAAGCTTCCACCAGAAAATATCAGGCGTGTTGCAGAAATTGTCATCCAACATAGGACCGATAAAACAGATCTGTCTGGTGAAATCCATATTGGTTTGGATAAAGAGAATAACACTACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTGGCATCAAAATGA ATGTCAAACCATCAATCTGATACAGCTGACCAAGATAAACTCGAACCTGATACCTTCTGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATGTACCCTCTCCTCCCCATAATTCACAGATATCTGGAGCTTCACCCCCATTTAGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAGGAAAAACTGAAGACATTGCTCAGGCAGAGTGTAGTTACTCTTTCGAAAGAAGTAAATGAGATGCTTGAGCCTGCTCGATCTACCCAGCGCTTGAAGTCATATTTGAGATCCAAAAAGAATTTGGAAAAAGTGGCTATGAATAATGTGAAGCAAGCTCCTTTTAAGAAACTCAAATCCTTATCCTCTTCAACCGGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATGATGATAGATGATGAATTGCAGTTTTTTCTAGATAATTATAGCGAGCAGATTGAAGACGTAGTTGCAAAATTTTCAAATGATCTATCTGGAACACTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAATTTCAGGCCTATGACCTTCAAGGAAAAAGAAGAGCTTCAGAAATTGATTCAGAAGCTTCCACCAGAAAATATCAGGCGTGTTGCAGAAATTGTCATCCAACATAGGACCGATAAAACAGATCTGTCTGGTGAAATCCATATTGGTTTGGATAAAGAGAATAACACTACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTGGCATCAAAATGA MSNHQSDTADQDKLEPDTFCYFKREVIDLLSQEDNVPSPPHNSQISGASPPFSDCIGPKLSHFKKEKLKTLLRQSVVTLSKEVNEMLEPARSTQRLKSYLRSKKNLEKVAMNNVKQAPFKKLKSLSSSTGLSAHEDCANLGSSMMIDDELQFFLDNYSEQIEDVVAKFSNDLSGTLGHMEQQLEEVLDSVLSNFRPMTFKEKEELQKLIQKLPPENIRRVAEIVIQHRTDKTDLSGEIHIGLDKENNTTLWRLYYYVEAVEKAKKLASK* Homology
BLAST of CsaV3_3G027590 vs. NCBI nr
Match: XP_011651583.1 (uncharacterized protein LOC101211269 isoform X1 [Cucumis sativus] >KAE8650792.1 hypothetical protein Csa_017467 [Cucumis sativus]) HSP 1 Score: 523.5 bits (1347), Expect = 1.1e-144 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. NCBI nr
Match: XP_008450000.1 (PREDICTED: uncharacterized protein LOC103491717 [Cucumis melo]) HSP 1 Score: 473.4 bits (1217), Expect = 1.3e-129 Identity = 247/269 (91.82%), Postives = 251/269 (93.31%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. NCBI nr
Match: KAA0037843.1 (uncharacterized protein E6C27_scaffold113G00300 [Cucumis melo var. makuwa] >TYK27222.1 uncharacterized protein E5676_scaffold236G00980 [Cucumis melo var. makuwa]) HSP 1 Score: 452.2 bits (1162), Expect = 3.1e-123 Identity = 237/265 (89.43%), Postives = 242/265 (91.32%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. NCBI nr
Match: XP_038893520.1 (uncharacterized protein LOC120082425 isoform X1 [Benincasa hispida]) HSP 1 Score: 417.9 bits (1073), Expect = 6.5e-113 Identity = 218/271 (80.44%), Postives = 239/271 (88.19%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. NCBI nr
Match: XP_022152181.1 (uncharacterized protein LOC111019964 [Momordica charantia] >XP_022152182.1 uncharacterized protein LOC111019964 [Momordica charantia]) HSP 1 Score: 370.2 bits (949), Expect = 1.6e-98 Identity = 199/271 (73.43%), Postives = 228/271 (84.13%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy Swiss-Prot
Match: Q84XV2 (Transcription factor GTE1 OS=Arabidopsis thaliana OX=3702 GN=GTE1 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 8.5e-07 Identity = 30/108 (27.78%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy Swiss-Prot
Match: Q9FT54 (Transcription factor GTE6 OS=Arabidopsis thaliana OX=3702 GN=GTE6 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05 Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy TrEMBL
Match: A0A1S3BNY6 (uncharacterized protein LOC103491717 OS=Cucumis melo OX=3656 GN=LOC103491717 PE=4 SV=1) HSP 1 Score: 473.4 bits (1217), Expect = 6.3e-130 Identity = 247/269 (91.82%), Postives = 251/269 (93.31%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy TrEMBL
Match: A0A5D3DUN6 (NET domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00980 PE=4 SV=1) HSP 1 Score: 452.2 bits (1162), Expect = 1.5e-123 Identity = 237/265 (89.43%), Postives = 242/265 (91.32%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy TrEMBL
Match: A0A6J1DGV0 (uncharacterized protein LOC111019964 OS=Momordica charantia OX=3673 GN=LOC111019964 PE=4 SV=1) HSP 1 Score: 370.2 bits (949), Expect = 7.5e-99 Identity = 199/271 (73.43%), Postives = 228/271 (84.13%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy TrEMBL
Match: A0A0A0L8R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G597270 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 7.1e-97 Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. ExPASy TrEMBL
Match: A0A6J1JG61 (bromodomain-containing protein 4A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486618 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 6.0e-96 Identity = 198/274 (72.26%), Postives = 224/274 (81.75%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. TAIR 10
Match: AT5G40600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 120.9 bits (302), Expect = 1.5e-27 Identity = 87/269 (32.34%), Postives = 143/269 (53.16%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. TAIR 10
Match: AT3G27420.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 109.0 bits (271), Expect = 6.0e-24 Identity = 82/249 (32.93%), Postives = 129/249 (51.81%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. TAIR 10
Match: AT2G34900.2 (Transcription factor GTE6 ) HSP 1 Score: 55.8 bits (133), Expect = 6.1e-08 Identity = 30/108 (27.78%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. TAIR 10
Match: AT2G34900.1 (Transcription factor GTE6 ) HSP 1 Score: 55.8 bits (133), Expect = 6.1e-08 Identity = 30/108 (27.78%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of CsaV3_3G027590 vs. TAIR 10
Match: AT3G52280.1 (general transcription factor group E6 ) HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06 Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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