Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGGTTTCGCTTGAAATTGTATAGATGAGTTTAGGTCATAGTTAGAATGGGGGAGGGCTGTTGTTCTTGAAAAGTTATTGTTTTCACGTTGTTTGTGAATAGAGATGAGTTCTTGATTTTATTTTTCACCAAAAGTATTTTTATTTATTGATCGTAGAGCATATATAGGTTTTAATTTAAACTCGAAACTCCAATGGTTCTTTCAACATTCCTAATCACCTAAATAAATACTTAAAAATTACAATTCATAATCTTTTGCTATTTTTATTGTTGGTTAGAATGTTTATAGTAATTATTTATCTACCAAATATAATAAGCGTAAGTTTAGATTAATTTTTATCTACGATATTATGTTTAACCCGTTTTCGTATACTCAAATCTAATTCTGTAAACATAAAATTATTAGAATGGATCTTAATATATTTTACAAATAATGGGTCAAGATTTTTTCTCTCTTTTAAAAAAGGTGAAGATTGTATTTTGTCATTATTATTTGGTTCAATGAATTACTCTTGTTAACTTAAATACAGCTTCATAATAAATGTCTGTTTATAGGTAATCTATTTTCATAGTAGACATTGAAGATCAATTATATATAGAGAGAGAGAGAAAGAGAGAGAAGGGAATCAAAATATTTTCTAAAAATTTGAGGATTATTCAAAACACTCAACGAACTAAATAGACAAAATAGATAGGGCAATGATGTACTTGTAATATAAGAAGAAGATTTAGTAAACATTAGTGATAGGCAGTAACAAATCATGATTAACATTGATGTGTGTTTTACATGAATCGTAGATTAG
mRNA sequence
ATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGATTAG
Coding sequence (CDS)
ATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGATTAG
Protein sequence
MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEGLEIGDDAEKESGKEEKKKPVLGED*
Homology
BLAST of CsaV3_3G025030 vs. NCBI nr
Match:
KAE8650731.1 (hypothetical protein Csa_023393 [Cucumis sativus])
HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD
Sbjct: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
Query: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG
Sbjct: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
Query: 121 LEIGDDAEKESGKEEKKKPVLGED 145
LEIGDDAEKESGKEEKKKPVLGED
Sbjct: 121 LEIGDDAEKESGKEEKKKPVLGED 144
BLAST of CsaV3_3G025030 vs. NCBI nr
Match:
XP_011651498.1 (uncharacterized protein LOC105434906 [Cucumis sativus])
HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD
Sbjct: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
Query: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG
Sbjct: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
Query: 121 LEIGDDAEKESGKEEKKKPVLGE 144
LEIGDDAEKESGKEEKKKPVLGE
Sbjct: 121 LEIGDDAEKESGKEEKKKPVLGE 143
BLAST of CsaV3_3G025030 vs. NCBI nr
Match:
XP_008447517.1 (PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo] >KAA0050786.1 uncharacterized protein E6C27_scaffold404G00370 [Cucumis melo var. makuwa] >TYK08560.1 uncharacterized protein E5676_scaffold323G001030 [Cucumis melo var. makuwa])
HSP 1 Score: 228.0 bits (580), Expect = 5.1e-56
Identity = 125/153 (81.70%), Postives = 132/153 (86.27%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQP FF QILPPRLEDAGLED ALPPDSIREAFFKAASAVKSRATA LS D
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 DEDDDVPCSPTSALPT--------DEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKG 120
D++DD P SPTS LPT DEDAPAICAT+KGL+LPEFGKDEVVIGGMEERRGK
Sbjct: 61 DDEDD-PWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEERRGKA 120
Query: 121 CVVDGLEGLEIGDDAEKE--SGKEEKKKPVLGE 144
CVVDGLEGLEIGD+AEKE SGKEE +KP+LGE
Sbjct: 121 CVVDGLEGLEIGDEAEKEKKSGKEE-EKPILGE 151
BLAST of CsaV3_3G025030 vs. NCBI nr
Match:
XP_038900451.1 (uncharacterized protein LOC120087668 [Benincasa hispida])
HSP 1 Score: 205.3 bits (521), Expect = 3.6e-49
Identity = 115/152 (75.66%), Postives = 122/152 (80.26%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAE HNP P F QILPPRLEDAGLED ALPPDSIREAFFKAASAVKS ATA LS SD
Sbjct: 1 MDAAEQHNPNPGIFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAVKSTATALLSPSD 60
Query: 61 DEDDDVPCSPTSALPT--------DEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKG 120
D+D P SPTS LPT D D PA+CAT+KGL+LPE G DEVVIGGMEERRGK
Sbjct: 61 DDD---PWSPTSTLPTDVVTGILPDRDDPAVCATEKGLKLPEIGGDEVVIGGMEERRGKA 120
Query: 121 CVVDGLEGLEIGDDA-EKESGKEEKKKPVLGE 144
CVVDGLEGLEIGD+A EK+SGKEE KP+LGE
Sbjct: 121 CVVDGLEGLEIGDEAKEKKSGKEE--KPILGE 147
BLAST of CsaV3_3G025030 vs. NCBI nr
Match:
KAG6606765.1 (hypothetical protein SDJN03_00107, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 179.5 bits (454), Expect = 2.1e-41
Identity = 101/157 (64.33%), Postives = 115/157 (73.25%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAE H +P F QILPPRLEDAGLED ALPPDSIREAFFKAASA+KS ATA LS D
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 DEDDD-----VPCSPTSALPTDE--------DAPAICATKKGLELPEFGKDEVVIGGMEE 120
ED D SPT++LPTD D PA CAT KGL+LPEF D VV+GGMEE
Sbjct: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
Query: 121 RRGKGCVVDGLEGLEIGDDAEKESGK-EEKKKPVLGE 144
RRGKGCVVD LEGLE+GD+A+K+ EE+++P+L E
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKNSGEEEEQPILAE 157
BLAST of CsaV3_3G025030 vs. ExPASy TrEMBL
Match:
A0A0A0LDD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483800 PE=4 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD
Sbjct: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
Query: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG
Sbjct: 61 DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
Query: 121 LEIGDDAEKESGKEEKKKPVLGE 144
LEIGDDAEKESGKEEKKKPVLGE
Sbjct: 121 LEIGDDAEKESGKEEKKKPVLGE 143
BLAST of CsaV3_3G025030 vs. ExPASy TrEMBL
Match:
A0A5A7U9B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001030 PE=4 SV=1)
HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 125/153 (81.70%), Postives = 132/153 (86.27%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQP FF QILPPRLEDAGLED ALPPDSIREAFFKAASAVKSRATA LS D
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 DEDDDVPCSPTSALPT--------DEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKG 120
D++DD P SPTS LPT DEDAPAICAT+KGL+LPEFGKDEVVIGGMEERRGK
Sbjct: 61 DDEDD-PWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEERRGKA 120
Query: 121 CVVDGLEGLEIGDDAEKE--SGKEEKKKPVLGE 144
CVVDGLEGLEIGD+AEKE SGKEE +KP+LGE
Sbjct: 121 CVVDGLEGLEIGDEAEKEKKSGKEE-EKPILGE 151
BLAST of CsaV3_3G025030 vs. ExPASy TrEMBL
Match:
A0A1S3BI85 (uncharacterized protein LOC103489947 OS=Cucumis melo OX=3656 GN=LOC103489947 PE=4 SV=1)
HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 125/153 (81.70%), Postives = 132/153 (86.27%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAEHHNPQP FF QILPPRLEDAGLED ALPPDSIREAFFKAASAVKSRATA LS D
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 DEDDDVPCSPTSALPT--------DEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKG 120
D++DD P SPTS LPT DEDAPAICAT+KGL+LPEFGKDEVVIGGMEERRGK
Sbjct: 61 DDEDD-PWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEERRGKA 120
Query: 121 CVVDGLEGLEIGDDAEKE--SGKEEKKKPVLGE 144
CVVDGLEGLEIGD+AEKE SGKEE +KP+LGE
Sbjct: 121 CVVDGLEGLEIGDEAEKEKKSGKEE-EKPILGE 151
BLAST of CsaV3_3G025030 vs. ExPASy TrEMBL
Match:
A0A6J1GBZ4 (uncharacterized protein LOC111452587 OS=Cucurbita moschata OX=3662 GN=LOC111452587 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 101/157 (64.33%), Postives = 115/157 (73.25%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAE H +P F QILPPRLEDAGLED ALPPDSIREAFFKAASA+KS ATA LS D
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 DEDDD-----VPCSPTSALPTDE--------DAPAICATKKGLELPEFGKDEVVIGGMEE 120
ED D SPT++LPTD D PA CAT KGL+LPEF D VV+GGMEE
Sbjct: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
Query: 121 RRGKGCVVDGLEGLEIGDDA-EKESGKEEKKKPVLGE 144
RRGKGCVVD LEGLE+GD+A +K+ EE+++P+L E
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAE 157
BLAST of CsaV3_3G025030 vs. ExPASy TrEMBL
Match:
A0A6J1K989 (uncharacterized protein LOC111492831 OS=Cucurbita maxima OX=3661 GN=LOC111492831 PE=4 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 91/143 (63.64%), Postives = 102/143 (71.33%), Query Frame = 0
Query: 1 MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
MDAAE H +P F QILPPRLEDAGLED ALPPDSI EAFFKAASA+KS AT LS +
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSICEAFFKAASAIKSTATGFLSSDE 60
Query: 61 DEDDD-----VPCSPTSALPTDE--------DAPAICATKKGLELPEFGKDEVVIGGMEE 120
+D D SPT+AL TD D PA CAT KGL+LPEF D VV+GGMEE
Sbjct: 61 GDDSDGYGVEDKWSPTAALSTDVVTGIWPELDPPAACATDKGLKLPEFDLDGVVVGGMEE 120
Query: 121 RRGKGCVVDGLEGLEIGDDAEKE 131
RRGKGC VD LEGLE+GD+A+K+
Sbjct: 121 RRGKGCAVDVLEGLEVGDEAKKK 143
BLAST of CsaV3_3G025030 vs. TAIR 10
Match:
AT1G15230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 58/141 (41.13%), Postives = 80/141 (56.74%), Query Frame = 0
Query: 17 ILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDED---DDVPCSPTSA 76
ILPP L DAGLED ALPP+SI+EAF KAA+AVKSRA + H +++ D +P +
Sbjct: 14 ILPPALADAGLEDCALPPESIQEAFRKAANAVKSRAASIFDHEEEDGCLADPIPETADKI 73
Query: 77 L--PTDEDAPAICATKKGLELPEFGKD--EVVIGGMEERRGKGCVVDGL-----EGLEIG 136
+ +E C KG+E K ++V+ G E GK C VDGL EG+E
Sbjct: 74 IVGGDNERDTGPCLAGKGIEKLAESKQAGDLVVAG-EGEEGKSC-VDGLKDLDVEGIERS 133
Query: 137 DDAEKES--GKEEKKKPVLGE 144
+ + +S +EE+ KP+L E
Sbjct: 134 SEKKDQSDEDEEEEMKPILVE 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8650731.1 | 7.1e-74 | 100.00 | hypothetical protein Csa_023393 [Cucumis sativus] | [more] |
XP_011651498.1 | 2.7e-73 | 100.00 | uncharacterized protein LOC105434906 [Cucumis sativus] | [more] |
XP_008447517.1 | 5.1e-56 | 81.70 | PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo] >KAA0050786.1 unc... | [more] |
XP_038900451.1 | 3.6e-49 | 75.66 | uncharacterized protein LOC120087668 [Benincasa hispida] | [more] |
KAG6606765.1 | 2.1e-41 | 64.33 | hypothetical protein SDJN03_00107, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LDD6 | 1.3e-73 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483800 PE=4 SV=1 | [more] |
A0A5A7U9B5 | 2.5e-56 | 81.70 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3BI85 | 2.5e-56 | 81.70 | uncharacterized protein LOC103489947 OS=Cucumis melo OX=3656 GN=LOC103489947 PE=... | [more] |
A0A6J1GBZ4 | 1.7e-41 | 64.33 | uncharacterized protein LOC111452587 OS=Cucurbita moschata OX=3662 GN=LOC1114525... | [more] |
A0A6J1K989 | 1.7e-36 | 63.64 | uncharacterized protein LOC111492831 OS=Cucurbita maxima OX=3661 GN=LOC111492831... | [more] |
Match Name | E-value | Identity | Description | |
AT1G15230.1 | 4.4e-13 | 41.13 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |