CsaV3_3G022990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G022990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 20536099 .. 20536647 (+)
RNA-Seq Expression	CsaV3_3G022990
Synteny	CsaV3_3G022990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGTCGATGAAGAAAGTATGGGAATAAAAGATTATGTAAAGCAAGAGGCAAAAGAAAGTGAAAAGATATACAAGAATAAAAGACTATGTAACAAGAAGAAGAAGATAGGAATAAGGAAGAGATGAAACAGCCAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

mRNA sequence

ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

Coding sequence (CDS)

ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

Protein sequence

MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHPFGDK*

Homology

[Close]

BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_011070 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 3.9e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60
           MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK
Sbjct: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60

Query: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120
           GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL
Sbjct: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120

Query: 121 DKGRNGKLGPHHHPFGDK 139
           DKGRNGKLGPHHHPFGDK
Sbjct: 121 DKGRNGKLGPHHHPFGDK 138

[Close]

BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_011472 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89

Query: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149

Query: 135 PHHHPFGDK 139
           P HHP+G+K
Sbjct: 150 PQHHPYGNK 154

[Close]

BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_022689 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 135
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_010598 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60

Query: 97  EEKLSIHKKEEILACARMLLWTQLDK 123
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN46686.1 (hypothetical protein Csa_020981 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 17  QKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKE 74
           ++ +K  R  +ARK+D+EL ++STSSP+ DFT+LATRTP RSAK I  L +RS+ +E
Sbjct: 74  KRRRKNRRNSQARKKDIELSMESTSSPNVDFTKLATRTPARSAKEIWALRRRSEERE 130

[Close]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL
Match: A0A0A0L7Q4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60
           MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK
Sbjct: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60

Query: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120
           GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL
Sbjct: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120

Query: 121 DKGRNGKLGPHHHPFGDK 139
           DKGRNGKLGPHHHPFGDK
Sbjct: 121 DKGRNGKLGPHHHPFGDK 138

[Close]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL
Match: A0A0A0LAF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89

Query: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149

Query: 135 PHHHPFGDK 139
           P HHP+G+K
Sbjct: 150 PQHHPYGNK 154

[Close]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL
Match: A0A0A0LTC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 135
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL
Match: A0A0A0L6W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60

Query: 97  EEKLSIHKKEEILACARMLLWTQLDK 123
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL
Match: A0A0A0KG13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 17  QKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKE 74
           ++ +K  R  +ARK+D+EL ++STSSP+ DFT+LATRTP RSAK I  L +RS+ +E
Sbjct: 74  KRRRKNRRNSQARKKDIELSMESTSSPNVDFTKLATRTPARSAKEIWALRRRSEERE 130

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57975.1	3.9e-69	100.00	hypothetical protein Csa_011070 [Cucumis sativus]	[more]
KGN57939.1	4.5e-25	57.36	hypothetical protein Csa_011472 [Cucumis sativus]	[more]
KGN65003.1	6.7e-13	52.63	hypothetical protein Csa_022689 [Cucumis sativus]	[more]
KGN57730.1	3.8e-08	53.49	hypothetical protein Csa_010598 [Cucumis sativus]	[more]
KGN46686.1	1.0e-05	54.39	hypothetical protein Csa_020981 [Cucumis sativus]	[more]

BLAST of CsaV3_3G022990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Q4	1.9e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1	[more]
A0A0A0LAF6	2.2e-25	57.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1	[more]
A0A0A0LTC4	3.3e-13	52.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
A0A0A0L6W8	1.9e-08	53.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1	[more]
A0A0A0KG13	5.0e-06	54.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1	[more]

BLAST of CsaV3_3G022990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022990.1	CsaV3_3G022990.1	mRNA