CsaV3_3G021990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021990
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRNA polymerase sigma factor
Locationchr3: 19086082 .. 19091441 (+)
RNA-Seq ExpressionCsaV3_3G021990
SyntenyCsaV3_3G021990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTTTCCTTTATCTTTTGAAGGTTAGTGTTTCTCAACTTAGTTTTCTTTTCCTGTTTTATTTTGGATGAACCTGTTAGTATTCAATCTTCTGGTTGTTTTTTTGGGCAAATTTAGAGAATCTTGCTTTTTGTGTGAACCTTCTTCAACATGGGGGTTTTAGGTGCAAATGGTTGGATTATTGTGTGTTTATGAACATTGTCTCTTAGATTAGATCCCCCACAATAAACCTACATGTATAAACACCTAAAGTTTCAAGCTTTGTAATTCCCCAGTTTGTTCTAACCGTAAAGAAGATGAAGTTTGGGGGGTGAAAAGGACTTCTTTACGTTACTTTTAAGGAAAATGGTATTAGCTTTGTGCTAAAACTAACTACAAAAGGTGGTATTTCTTCTACCTGTGATGACTATTAGCTTGTTGTACCAAAATGGATGCTCTTAAGGATTTGTGCTAATGAATTGTTTGGTGATTCATCCCCAAGCGAAAATTTAGTCCTTTCCTTTCTGAAGACTTTTAGCCATTGTATTGTTTCGAGGTTAGGATTAGAATGATAAGAGTTTCATTTACCATTTTATTGTATGCTGCTGGAGCTTCTATATTGACTTCTTTTTCTTGTTTTTAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGGAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAGGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGTGAGGGATAAGAATTTGAATGCAGGAAACTGATTTCAATGGAAGTTTGAATAAAAGTCATTCTTGTTCACTGTCAATTAACGTCTTCCTCTATCAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGGTAAGAGTCACTTCATTCCCACAATTAAAGCATCATTGCTTCAGGCTTCCATGATACCATCACATCCTTCAAATGGCATACGAGGATATATACTCAATGCCTTTTCTATCCCATGAAAATAAGTTAATTTCAATTCTCATCCATCACCCATGGAATTTGTCAGAAACCTACAAGATTTTTATGATTGATATGTTTGCTTGCGATATTCTATGTAATCACTACCTAAGATAACCTATTGAAGAAAGTGCAACTAGCCTGAATATAGTTGTTATCGATTTGATATATATGTACATTGTACAGTGTCTACTGCAAAAAAGATGAAACTAATGGTTAGATTTTACATCTGTTGCAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCAAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTTAGTTCTTAGTCTACTTCAGCCTTTTCATTCCTCAACTTTTTATCACAGCAATGGATTACTTGCATTGATCAATCATCATTGTACTTTTCTCCATGACATCATATTATTGCTGCTAAATGTGAAACAAATAAAAGAAGTTATCTCGAATAGAGAAGAAACAGAGAGAAGGATAGCAAGGCAATATTTAAACTTTAAACTAAAATCTCATATTATGAGTTTGATCTTGACATCTCTATGAAATAATTACATAAGAAAAAAGAATAAGATACCGACGAAATCTTGAGGGTGTAGATTCCTGCTACCGTCTGAAGGGGAAGGAAGGTTTTCTATCCTTCTAGTTGTAGTTCAAAGGAAAAAAAAAAAAAAGACTCTTAAAGTTTTGAAGCTCTGCATTTCAACTGACTGAAAGTGCAATAAAATTCATGCCAGAGTAGTTAGAAATTTTAGGAAGCAAGCTTTACGATAAATCATTAGCTCAGATTGCAAGATTTCTTTTACAGGTTCATATTGGCATCAATTAAAAAGTTGAACTGAATCTCATTACTTTGTTATGGTTTAAATCTAAAGCATCTTCTAAATGATTTTTGGTGCGTATGATGGCATAGATTATTGAGATTGGACCTTTCTTAGTGCAGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGGTAATTTTCTTGTACAAATCTTGTTAATACGTTCCCTTTCTCCTCCAAAGCACAACGTTTTTTTCCTTCTTTTTTATATATGCATTTGTTCAATTAATAGTACAGGACAATATTAAATTCTAAATAGACAACCACCGTGTATTGAACCCCCATTACCTCTTAGCTCTTTATCGAACTCAAACATTTTATTCACTACTAGTTCAACCCACGGTGGTTCCTTCTAACCACAATGTTAATCATCTTAAAAGAATGTTTGGATTTTGAACATAGCCGGAGATGTTTTCTTTCATATTTCTGCTAAATATTTATCACCCTTGTTTCCATGATTTAACTTGTGAAATATATCCGGTAAAAATGTATTCTCATCATGAATTAAAGGTGAAACGCATCTTACCGGTATGTTATACATCTATTTTGTTTGTTTGAGATGCAACTGATTTGAACAGCTTTTGGTAGATTTCTTAGGCATTGCAGACATGGGATTTTACTTTTAACTCAAAATTGTTGGGCGGATGGGAGCCGTTTTTCTTGAAATGTCATACATTGCTGATATTTATATTTTAATTAATAACATGTTCTTAAAAACTTTTCCAGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTCGATTACCTTCGTAGGTATTTAATCTGAACGGATGAGAACATCATGCTTTGTTTCAATGATCTTGTACTCTGGATAATTTGTTATGGCCAAAACATCTCAAGGGGCAAGAGATTTGTACCATATATTTGTAACTACTTGAATATAGAAACCTCACACCATATGATTCATATTTTGAAGGACATTACAATTGGTAGCTCTGCTACTTTCTTTGTAGGAAGAAGAGAGTTTTATAGGAGAAAAATAGCGACCCCCCC

mRNA sequence

ATGCTCTTAAGGATTTGTGCTAATGAATTGTTTGGTGATTCATCCCCAAGCGAAAATTTAGTCCTTTCCTTTCTGAAGACTTTTAGCCATTGTATTGTTTCGAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGGAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAGGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCAAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTCGATTACCTTCGTAGGTATTTAATCTGA

Coding sequence (CDS)

ATGCTCTTAAGGATTTGTGCTAATGAATTGTTTGGTGATTCATCCCCAAGCGAAAATTTAGTCCTTTCCTTTCTGAAGACTTTTAGCCATTGTATTGTTTCGAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGGAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAGGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCAAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTCGATTACCTTCGTAGGTATTTAATCTGA

Protein sequence

MLLRICANELFGDSSPSENLVLSFLKTFSHCIVSRLLGMGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI*
Homology
[Close]
BLAST of CsaV3_3G021990 vs. NCBI nr
Match: XP_031739380.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 [Cucumis sativus] >KAE8650643.1 hypothetical protein Csa_010082 [Cucumis sativus])

HSP 1 Score: 1116.3 bits (2886), Expect = 0.0e+00
Identity = 585/585 (100.00%), Postives = 585/585 (100.00%), Query Frame = 0 

Query: 1   MLLRICANELFGDSSPSENLVLSFLKTFSHCIVSRLLGMGVVTVSSAAARTPFRLGVKFS 60
           MLLRICANELFGDSSPSENLVLSFLKTFSHCIVSRLLGMGVVTVSSAAARTPFRLGVKFS
Sbjct: 1   MLLRICANELFGDSSPSENLVLSFLKTFSHCIVSRLLGMGVVTVSSAAARTPFRLGVKFS 60

Query: 61  NHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLI 120
           NHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLI
Sbjct: 61  NHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLI 120

Query: 121 DEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIV 180
           DEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIV
Sbjct: 121 DEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIV 180

Query: 181 RNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNK 240
           RNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNK
Sbjct: 181 RNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNK 240

Query: 241 EGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLV 300
           EGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLV
Sbjct: 241 EGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLV 300

Query: 301 QPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVL 360
           QPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVL
Sbjct: 301 QPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVL 360

Query: 361 FVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTL 420
           FVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTL
Sbjct: 361 FVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTL 420

Query: 421 SSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYS 480
           SSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYS
Sbjct: 421 SSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYS 480

Query: 481 LHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDG 540
           LHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDG
Sbjct: 481 LHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDG 540

Query: 541 KGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 586
           KGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI
Sbjct: 541 KGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 585

[Close]
BLAST of CsaV3_3G021990 vs. NCBI nr
Match: XP_011651413.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 1042.3 bits (2694), Expect = 1.5e-300
Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN
Sbjct: 121 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. NCBI nr
Match: KAA0050456.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 991.5 bits (2562), Expect = 3.1e-285
Identity = 522/547 (95.43%), Postives = 530/547 (96.89%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSKKS  RP DGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. NCBI nr
Match: TYK03136.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 990.3 bits (2559), Expect = 6.9e-285
Identity = 521/547 (95.25%), Postives = 530/547 (96.89%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSK+S  RP DGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. NCBI nr
Match: XP_008465379.1 (PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 895.6 bits (2313), Expect = 2.3e-256
Identity = 479/547 (87.57%), Postives = 490/547 (89.58%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSKKS  RP DGIVRN+TKRIKRLDLDKRIALKNK++               
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKA-------------- 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
                                 E K+   +++ KETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 ----------------------ERKSGSFIKETKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 511

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 511

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match: Q9ZNX9 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 5.3e-171
Identity = 335/554 (60.47%), Postives = 403/554 (72.74%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVES 98
           MGVV++SS+AAR+P  LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 99  NNRRKKRSGNTSKPLKRVKAVLI---DEATPCSLDLDYNEAAAKLENIFKLSPMTE---D 158
           +N  KKR     KP K  K  L    + A  CSL +DYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 159 SDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 218
            D E    ++K  ++R +K +      +VRN  K+ KR+ LDKRIALK   + K V    
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 219 KQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 278
            +K TK +                                     E+++I+RLVRDYSAS
Sbjct: 181 DKKVTKRQ------------------------------------QEEEKIERLVRDYSAS 240

Query: 279 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 338
            D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+EV++ LQK LGREP E E+A   N
Sbjct: 241 NDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEIN 300

Query: 339 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 398
           M   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF +F +GPKFQDLCQAG++GLITAI
Sbjct: 301 MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAI 360

Query: 399 DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 458
           DRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV FGL+SVRVEI +AK EL  E+ R 
Sbjct: 361 DRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRP 420

Query: 459 PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 518
           PTE E+  ++ I+ ERY EV+RA KPV SL+S+HS T EE INGITDV+G G +N RQPA
Sbjct: 421 PTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPA 480

Query: 519 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 578
           LLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 517

Query: 579 KHPARVDYLRRYLI 586
           KH ARVDYLR+Y++
Sbjct: 541 KHQARVDYLRQYIV 517

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-38
Identity = 112/346 (32.37%), Postives = 180/346 (52.02%), Query Frame = 0 

Query: 240 KEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKL 299
           K GKA  S R+ +  K    E            D + L  +++    +L + E   L + 
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTE------------DSIRLYLQEIGRIRLLRADEEIELARK 118

Query: 300 VQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLV 359
           +  +  L  V+E L + L R+P + E A A  + +   R +L +GR A++K+++ NLRLV
Sbjct: 119 IADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLV 178

Query: 360 LFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMT 419
           + +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA +WIR AI R++ 
Sbjct: 179 VSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 238

Query: 420 LSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPV 479
             S T R+   L      I++    L  E+ R PTE EI  ++ ++ E+   + ++ +  
Sbjct: 239 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP 298

Query: 480 YSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGL 539
            SL +      +  +    + +G   +++    LLR  L+ VLDSL P+E  V+R RYGL
Sbjct: 299 ISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGL 358

Query: 540 DGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 585
           D    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Sbjct: 359 DDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-37
Identity = 101/299 (33.78%), Postives = 165/299 (55.18%), Query Frame = 0 

Query: 287 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 346
           +L + E   L + +  + AL  +++EL + L R P++ E A A +  + + RR+L  GR 
Sbjct: 103 LLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRR 162

Query: 347 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 406
           A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 222

Query: 407 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQ 466
            +WIR AI R++   S T R+   L      I++    L  E+ R PTE EI  ++ ++ 
Sbjct: 223 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 282

Query: 467 ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLK 526
           E+   + ++ +   SL +      +  +    + +G   ++     LLR  L+ VL +L 
Sbjct: 283 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLS 342

Query: 527 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 585
           P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Sbjct: 343 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.5e-35
Identity = 93/263 (35.36%), Postives = 145/263 (55.13%), Query Frame = 0 

Query: 323 EGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQA 382
           E E +   N N    RR+L + R A++K+++ NLRLV+ +  KY      G  FQDL Q 
Sbjct: 165 ENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQE 224

Query: 383 GVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAK 442
           G  GLI A ++F+ ++ ++ STYA +WIR AI R++   S T R+   L      I++  
Sbjct: 225 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 284

Query: 443 LELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEG 502
             L  E+ R PTE EI  K+ ++ E+   + ++ +   SL +      +  +    + +G
Sbjct: 285 KLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG 344

Query: 503 TGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVR 562
              ++     LLR  L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R
Sbjct: 345 ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 404

Query: 563 KHEVKALMKLKHPARVDYLRRYL 585
           + E KAL KL+HP R   L+ Y+
Sbjct: 405 QIEAKALRKLRHPNRNSILKEYI 424

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-33
Identity = 89/248 (35.89%), Postives = 139/248 (56.05%), Query Frame = 0 

Query: 338 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 397
           +R+L  GR A+ K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ +
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHE 230

Query: 398 RKFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGE 457
           + ++ STYA +WIR AI R++   S T R+   L      I++    L  E+ R PTE E
Sbjct: 231 KGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEE 290

Query: 458 ITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLA 517
           I  K+ ++ E+   + ++ +   SL +      +  +    + +G   ++     LLR  
Sbjct: 291 IATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLRED 350

Query: 518 LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 577
           L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R
Sbjct: 351 LENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 410

Query: 578 VDYLRRYL 585
              L+ Y+
Sbjct: 411 NSILKEYI 415

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match: A0A0A0LCQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354500 PE=3 SV=1)

HSP 1 Score: 1042.3 bits (2694), Expect = 7.4e-301
Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN
Sbjct: 121 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match: A0A5A7U8E5 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00690 PE=3 SV=1)

HSP 1 Score: 991.5 bits (2562), Expect = 1.5e-285
Identity = 522/547 (95.43%), Postives = 530/547 (96.89%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSKKS  RP DGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match: A0A5D3BY73 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00110 PE=3 SV=1)

HSP 1 Score: 990.3 bits (2559), Expect = 3.3e-285
Identity = 521/547 (95.25%), Postives = 530/547 (96.89%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSK+S  RP DGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match: A0A1S3CQ87 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503014 PE=3 SV=1)

HSP 1 Score: 895.6 bits (2313), Expect = 1.1e-256
Identity = 479/547 (87.57%), Postives = 490/547 (89.58%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD E KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218
           GRSKRGQ+RSKKS  RP DGIVRN+TKRIKRLDLDKRIALKNK++               
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKA-------------- 180

Query: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278
                                 E K+   +++ KETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 ----------------------ERKSGSFIKETKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 511

Query: 579 YLRRYLI 586
           YLRRYLI
Sbjct: 541 YLRRYLI 511

[Close]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match: A0A6J1E9R5 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 871.7 bits (2251), Expect = 1.7e-249
Identity = 464/554 (83.75%), Postives = 488/554 (88.09%), Query Frame = 0 

Query: 32  IVSRLLGMGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQV 91
           +++ LLGMGVVTVSS+AARTPFRLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQV
Sbjct: 2   VLAMLLGMGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQV 61

Query: 92  TLPVESNNRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTED 151
           TLPVESNNR +KR+G +SK LKRVKAVLIDEATPC+ D+DYNEAAAKLENIFKLSP+TED
Sbjct: 62  TLPVESNNRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTED 121

Query: 152 SDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 211
           +D E +DGR KRGQ+R KK   RP DG+VRNQTKRIKRLDLD                  
Sbjct: 122 TDMENEDGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLD------------------ 181

Query: 212 KQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 271
                               KRIALKSNKEGK+ PSL KQK+TK+E DEID LVR+YSAS
Sbjct: 182 --------------------KRIALKSNKEGKSAPSLSKQKDTKSEADEIDDLVRNYSAS 241

Query: 272 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 331
           TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKAL++ QEELQKGLGREPTEGELANATN
Sbjct: 242 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATN 301

Query: 332 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 391
           MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI
Sbjct: 302 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 361

Query: 392 DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 451
           DRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL
Sbjct: 362 DRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 421

Query: 452 PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 511
           PTE E+ AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEE I+GI DVEGTGGDNRRQ A
Sbjct: 422 PTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGIADVEGTGGDNRRQSA 481

Query: 512 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 571
           LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 482 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 517

Query: 572 KHPARVDYLRRYLI 586
           KHPARVDYLRRYLI
Sbjct: 542 KHPARVDYLRRYLI 517

[Close]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 602.4 bits (1552), Expect = 3.8e-172
Identity = 335/554 (60.47%), Postives = 403/554 (72.74%), Query Frame = 0 

Query: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVES 98
           MGVV++SS+AAR+P  LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 99  NNRRKKRSGNTSKPLKRVKAVLI---DEATPCSLDLDYNEAAAKLENIFKLSPMTE---D 158
           +N  KKR     KP K  K  L    + A  CSL +DYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 159 SDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 218
            D E    ++K  ++R +K +      +VRN  K+ KR+ LDKRIALK   + K V    
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 219 KQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 278
            +K TK +                                     E+++I+RLVRDYSAS
Sbjct: 181 DKKVTKRQ------------------------------------QEEEKIERLVRDYSAS 240

Query: 279 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 338
            D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+EV++ LQK LGREP E E+A   N
Sbjct: 241 NDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEIN 300

Query: 339 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 398
           M   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF +F +GPKFQDLCQAG++GLITAI
Sbjct: 301 MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAI 360

Query: 399 DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 458
           DRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV FGL+SVRVEI +AK EL  E+ R 
Sbjct: 361 DRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRP 420

Query: 459 PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 518
           PTE E+  ++ I+ ERY EV+RA KPV SL+S+HS T EE INGITDV+G G +N RQPA
Sbjct: 421 PTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPA 480

Query: 519 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 578
           LLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 517

Query: 579 KHPARVDYLRRYLI 586
           KH ARVDYLR+Y++
Sbjct: 541 KHQARVDYLRQYIV 517

[Close]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-31
Identity = 127/458 (27.73%), Postives = 209/458 (45.63%), Query Frame = 0 

Query: 137 AKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRI 196
           AK   +FK S  T        D RSK  Q   K+ A     GI+ +       +  DK  
Sbjct: 125 AKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERA-----GILGHLAVSDNGIVSDKIT 184

Query: 197 ALKNKKEGKAVALLRKQKDTKNEADEIDGLL-------LNLEKRIALKSNKEGKAVPSLR 256
           A  + KE        KQ++ +   ++    L          + R A    K    +PS++
Sbjct: 185 ASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVK 244

Query: 257 KQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEV 316
                K +     RLV       D +           +L   E   L   +Q +  L  +
Sbjct: 245 TGSSPKKK-----RLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERL 304

Query: 317 QEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFED 376
           Q EL +  GR+PT  + A+A  ++   +R+++  G   ++K+IK N+RLV+ +   Y   
Sbjct: 305 QTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY--- 364

Query: 377 FASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMT-LSSFTRVSF 436
             +G   QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F
Sbjct: 365 QGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPF 424

Query: 437 GLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTT 496
            +      ++ A+ +L  E  + P   EI    G+S +R + V+ + KP  SL  +    
Sbjct: 425 HMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMN 484

Query: 497 SE-ELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLG 556
              +    I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL 
Sbjct: 485 QNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQ 544

Query: 557 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 586
           EI   + +SRE VR+ E  A  KLK+  R ++L++YL+
Sbjct: 545 EIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-27
Identity = 117/412 (28.40%), Postives = 202/412 (49.03%), Query Frame = 0 

Query: 196 IALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRK-QKET 255
           +A K     K  ALL    DT  EA+  D +  +L    ++   ++G  V S R+ ++  
Sbjct: 143 LAQKALSASKQAALL--VDDT--EANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRA 202

Query: 256 KNE--------DDE--------IDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFK 315
           KN         DDE          +  +  + + D + L     +   +L + E   L  
Sbjct: 203 KNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELIS 262

Query: 316 LVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRL 375
            +Q +  L +V+ +L+   G EPT GE A A  ++   ++  +  GR++R KLI  NLRL
Sbjct: 263 HIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRL 322

Query: 376 VLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSM 435
           V+ +  +Y      G  FQDL Q G  GL+ ++++F+P+   R +TYA +WIR +I +S+
Sbjct: 323 VVHIAKQYQN---RGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSI 382

Query: 436 TLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKP 495
             +S T R+   +  +  ++  A+   + E +  P++ E+   VG+S E+  +++  T+ 
Sbjct: 383 FQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRT 442

Query: 496 VYSLH----SRHSTTSEELI--NGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLV 555
             S+     S   TT +E+   +GI     + G       L+R  + ++L+ L PKE  +
Sbjct: 443 PLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQ-----LMRNHVRNLLNVLSPKERRI 502

Query: 556 IRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY 584
           I+ R+G+DG   R+L EI     +S+E VR+ E +AL +LK       L  Y
Sbjct: 503 IKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-21
Identity = 93/299 (31.10%), Postives = 147/299 (49.16%), Query Frame = 0 

Query: 287 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 346
           VL   E  RL K ++    L + +  L+  LG EP++ +LA +  ++  +++  L     
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258

Query: 347 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 406
           AR KL   N+RLV+ +  +Y      G +  DL Q G+ GL+  I++F+  + FR+STY 
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDN---LGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 318

Query: 407 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQ 466
            +WIR  + R++  +S T R+   L      I+ AKL L  E    P+   I   + +SQ
Sbjct: 319 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 378

Query: 467 ERYLEVMRATKPVYSLHSRHSTTSEELINGITD---VEGTGGDNRRQPALLRLALDD--- 526
           ++      A   V+SL  R +  S   + G T    +  T  +N        LAL +   
Sbjct: 379 KKVRNATEAVSKVFSL-DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 438

Query: 527 --VLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 577
             +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Sbjct: 439 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491

[Close]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-18
Identity = 86/302 (28.48%), Postives = 139/302 (46.03%), Query Frame = 0 

Query: 290 SSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARN 349
           S   T +   V+ +  +  ++ +L++  G+  +    A A  MN   + R L  G   R+
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 350 KLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFW 409
           +L+K    LVLF+   Y      G   +DL QAG  G++   +RF+  R ++ STY  +W
Sbjct: 335 ELVKSTRSLVLFLARNY---RGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYW 394

Query: 410 IRHAIIRSMTLSSFTR-VSFGLDSVRV--EIQRAKLELLCELH-RLPTEGEITAKVGISQ 469
           IR ++  S  +S   R V      +R    IQ+A+  L      +   + EI    G S 
Sbjct: 395 IRKSM--STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSV 454

Query: 470 ERYLEVMRATKPVYSLHSRHS---TTSEELINGITDVEGTGGDNRRQPALLRLALDDVLD 529
           ++     +  K V S+  +     TT        T +E       RQ A  R  + D+L+
Sbjct: 455 KKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSA--RRDIHDLLE 514

Query: 530 SLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 585
            L+P+E  V+  RYGL     ++L EI   L +S+E +RK E +A+ KL+     + LR 
Sbjct: 515 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 569

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739380.10.0e+00100.00RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 [Cucumi... [more]
XP_011651413.11.5e-300100.00RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X2 [Cucumi... [more]
KAA0050456.13.1e-28595.43RNA polymerase sigma factor sigE [Cucumis melo var. makuwa][more]
TYK03136.16.9e-28595.25RNA polymerase sigma factor sigE [Cucumis melo var. makuwa][more]
XP_008465379.12.3e-25687.57PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucumi... [more]
BLAST of CsaV3_3G021990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZNX95.3e-17160.47RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis tha... [more]
P266831.8e-3832.37RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... [more]
P380231.6e-3733.78RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ... [more]
P745655.5e-3535.36RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)... [more]
P523221.4e-3335.89RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ... [more]
BLAST of CsaV3_3G021990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCQ97.4e-301100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354500 PE=3 SV=1[more]
A0A5A7U8E51.5e-28595.43RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3BY733.3e-28595.25RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CQ871.1e-25687.57RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Cucumis melo OX... [more]
A0A6J1E9R51.7e-24983.75RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS... [more]
BLAST of CsaV3_3G021990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24120.13.8e-17260.47sigma factor E [more]
AT1G08540.11.3e-3127.73RNApolymerase sigma subunit 2 [more]
AT2G36990.11.1e-2728.40RNApolymerase sigma-subunit F [more]
AT1G64860.13.6e-2131.10sigma factor A [more]
AT3G53920.14.8e-1828.48RNApolymerase sigma-subunit C [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 402..410
score: 63.94
coord: 524..536
score: 38.21
coord: 560..571
score: 49.09
coord: 378..391
score: 50.0
coord: 545..560
score: 38.47
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 298..341
e-value: 2.1E-5
score: 26.5
coord: 424..476
e-value: 6.4E-6
score: 28.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 508..585
e-value: 1.2E-20
score: 75.0
NoneNo IPR availableGENE3D1.10.1740.10coord: 342..419
e-value: 1.3E-22
score: 81.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..181
NoneNo IPR availablePANTHERPTHR30603:SF4RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIALcoord: 228..585
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 40..226
NoneNo IPR availablePANTHERPTHR30603:SF4RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIALcoord: 40..226
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 228..585
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 520..573
e-value: 2.1E-13
score: 49.5
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 435..499
e-value: 5.3E-10
score: 39.2
coord: 306..346
e-value: 3.2E-6
score: 27.1
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 351..417
e-value: 1.7E-11
score: 43.8
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 347..573
e-value: 3.8E-23
score: 79.9
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 511..584
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 432..488
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 269..418

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021990.1CsaV3_3G021990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity