CsaV3_3G000610 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G000610
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type domain-containing protein
Location	chr3: 528591 .. 529010 (-)
RNA-Seq Expression	CsaV3_3G000610
Synteny	CsaV3_3G000610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

mRNA sequence

GTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

Coding sequence (CDS)

GTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

Protein sequence

VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTDEMVIWFSSFHTSGF*

Homology

[Close]

BLAST of CsaV3_3G000610 vs. NCBI nr
Match: KAE8649999.1 (hypothetical protein Csa_010276, partial [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 1.0e-77
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60
           VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC
Sbjct: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60

Query: 61  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 120
           LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN
Sbjct: 61  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 120

Query: 121 QILTDEMVIWFSSFHTSGF 140
           QILTDEMVIWFSSFHTSGF
Sbjct: 121 QILTDEMVIWFSSFHTSGF 139

[Close]

BLAST of CsaV3_3G000610 vs. NCBI nr
Match: KAA0052944.1 (E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 133/144 (92.36%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRP-RFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCV 60
           VFFFFYNN IGFRSRP RFKQATPLP  GNSSLRP+PTDDCTI+ALSSLEKALEGETCCV
Sbjct: 6   VFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLRPMPTDDCTIIALSSLEKALEGETCCV 65

Query: 61  CLSSMGNTDRDGDKGV--GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME--GGGSH 120
           CLSSMGNTD DGDKGV  GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME  GGGSH
Sbjct: 66  CLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGGGSH 125

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 140
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 126 EDETNQILTDEMVIWFSSFHTSGF 149

[Close]

BLAST of CsaV3_3G000610 vs. NCBI nr
Match: XP_038906276.1 (E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-64
Identity = 120/141 (85.11%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60
           VFFFFYNN +GFRSR R KQATPLP  GN SLRP+  DDC I+ LSS EKALEGETCCVC
Sbjct: 6   VFFFFYNNFMGFRSRLRCKQATPLPHGGNLSLRPITPDDCAIVTLSSPEKALEGETCCVC 65

Query: 61  LSSMGNTDRDGDKGVG--TSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDE 120
           LSSMGN D D DKGVG  TSVLPCLHEFHKVCV+RWFEECRRTCPICRYSMEGGGSHED 
Sbjct: 66  LSSMGNKDGDRDKGVGTSTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGGSHEDG 125

Query: 121 TNQILTDEMVIWFSSFHTSGF 140
           TNQILTDEMVIWFSSFHTSGF
Sbjct: 126 TNQILTDEMVIWFSSFHTSGF 146

[Close]

BLAST of CsaV3_3G000610 vs. NCBI nr
Match: KAG6577791.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.0 bits (598), Expect = 4.1e-58
Identity = 109/140 (77.86%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60
           +FFFFYNNLIGFR+ P  KQATPLPRS +SSLRP+  DDC + ALSS EKALEGETCCVC
Sbjct: 6   LFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPMTPDDC-VAALSSPEKALEGETCCVC 65

Query: 61  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGG-SHEDET 120
           LS MGN D+  D+G+GTSVLPC HEFHK+C++RWFEECRRTCPICRYSMEGGG +HED +
Sbjct: 66  LSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHEDGS 125

Query: 121 NQILTDEMVIWFSSFHTSGF 140
           N++LTDEMVIWFSSFHTSGF
Sbjct: 126 NEMLTDEMVIWFSSFHTSGF 142

[Close]

BLAST of CsaV3_3G000610 vs. NCBI nr
Match: KAG7015830.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 9.0e-58
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60
           +FFFFYNNLIGFR+ P  KQATPLPRS +SSLRP   DDC + ALSS EKALEGETCCVC
Sbjct: 6   LFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVC 65

Query: 61  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGG-SHEDET 120
           LS MGN D+  D+G+GTSVLPC HEFHK+C++RWFEECRRTCPICRYSMEGGG +HED +
Sbjct: 66  LSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHEDGS 125

Query: 121 NQILTDEMVIWFSSFHTSGF 140
           N++LTDEMVIWFSSFHTSGF
Sbjct: 126 NEMLTDEMVIWFSSFHTSGF 142

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09
Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 26  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 85
           R     L+ +PT D         +K  E + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 86  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTDE 127
           +H  CV+ W  + R+TCPIC+  +  G   E++  +    E
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQEQE 292

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot
Match: Q9H6Y7 (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 26  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 85
           R     L+ +PT D         +K  + + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDQYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 86  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 122
           +H  CV+ W  + R+TCPIC+  +  G   ED+  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEE 287

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 30/96 (31.25%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 26  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 85
           R     L+ +PT D         +K  E + C +CL        DGDK     +LPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRILPCAHA 266

Query: 86  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 122
           +H  CV+ W  + R+TCPIC+  +  G   E++  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEE 287

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-07
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 25  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 84
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 85  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 126
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot
Match: Q8BP31 (RING finger protein 122 OS=Mus musculus OX=10090 GN=Rnf122 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 52  LEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEG 111
           L G+TC VCL      D  G       VLPC H FH+ C+ +W  E R  CP+C   +  
Sbjct: 88  LYGQTCAVCLEDFKGKDELG-------VLPCQHAFHRKCLVKWL-EVRCVCPMCNKPI-A 147

Query: 112 GGSHEDETNQILTDEMV 129
           G +   ++  IL DE+V
Sbjct: 148 GPTETSQSIGILLDELV 155

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.0e-78
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 60
           VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC
Sbjct: 6   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 65

Query: 61  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 120
           LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN
Sbjct: 66  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 125

Query: 121 QILTDEMVIWFSSFHTSGF 140
           QILTDEMVIWFSSFHTSGF
Sbjct: 126 QILTDEMVIWFSSFHTSGF 144

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 7.7e-71
Identity = 133/144 (92.36%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRP-RFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCV 60
           VFFFFYNN IGFRSRP RFKQATPLP  GNSSLRP+PTDDCTI+ALSSLEKALEGETCCV
Sbjct: 6   VFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLRPMPTDDCTIIALSSLEKALEGETCCV 65

Query: 61  CLSSMGNTDRDGDKGV--GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME--GGGSH 120
           CLSSMGNTD DGDKGV  GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME  GGGSH
Sbjct: 66  CLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGGGSH 125

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 140
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 126 EDETNQILTDEMVIWFSSFHTSGF 149

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 94/143 (65.73%), Postives = 106/143 (74.13%), Query Frame = 0


Query: 1   VFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTI---LALSSLEKALEGE-T 60
           VFFFFY N IGFR RP+ KQ T LP  G+S+LR +  D+  I   + LSS  KALEGE  
Sbjct: 6   VFFFFY-NFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMC 65

Query: 61  CCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHE 120
           CCVCLSS+       ++G+ TSVLPCLHEFHKVCV+RWFEE RRTCPICRYSMEG G   
Sbjct: 66  CCVCLSSI-------EEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGN 125

Query: 121 DETNQILTDEMVIWFSSFHTSGF 140
           +   QILTDEMVIWFSSFHTSGF
Sbjct: 126 ENGTQILTDEMVIWFSSFHTSGF 140

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL
Match: A0A7N2R4T7 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 4   FFYNNLIG----FRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCV 63
           F YN+LIG     R++P F +A  L       L  +  D+  +     +E  +EGE CCV
Sbjct: 9   FIYNHLIGNGDHLRAQPTFWEAPSL-------LHKVSLDEVEVEV--EVEVEVEGEVCCV 68

Query: 64  CLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEE-CRRTCPICRYSMEGGGSHEDE 123
           CLS +    + G + + T  LPCLHEFHK+CV+RWF   CR+TCP+CR+SM  GG  +  
Sbjct: 69  CLSRL----KKGQEEMRT--LPCLHEFHKICVDRWFNHVCRKTCPVCRFSM--GGEDKFH 128

Query: 124 TNQILTDEMVIWFSSFHTSGF 140
           T Q+LTDEMVIWFSSFH +GF
Sbjct: 129 TQQVLTDEMVIWFSSFHVAGF 132

[Close]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL
Match: A0A6A1UIA7 (Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24
Identity = 69/139 (49.64%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 9   LIGFRSRPRFKQATPLPRSGNSSLRPLPTD----DCTILA---LSSLEKALEGE-TCCVC 68
           LIG R++P  K+A   P S  S +     D    D T+ A    SS  +  EGE  CCVC
Sbjct: 101 LIGLRAQPALKEA---PSSSYSVINWDDLDEVKEDPTMSARGSSSSSGEVHEGEQQCCVC 160

Query: 69  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 128
           LS +        KG  T +LPCLHEFHKVCV+RWF  CR+TCP+CR+SM  GG       
Sbjct: 161 LSRL-------KKGQDTRILPCLHEFHKVCVDRWFNSCRKTCPVCRFSM--GGEDNCRVQ 220

Query: 129 QILTDEMVIWFSSFHTSGF 140
           + LTDEMVIWFSSFH +GF
Sbjct: 221 EALTDEMVIWFSSFHVAGF 227

[Close]

BLAST of CsaV3_3G000610 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 9.4e-13
Identity = 36/84 (42.86%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 53  EGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRR-TCPICRYSMEG 112
           E E C VCL  M   D           LPC HEFH +CV+ WF   R+  CP+CR+S   
Sbjct: 22  EEECCSVCLMRMEAKD-------VIKSLPCSHEFHSLCVDTWFNVSRKICCPLCRFS--- 81

Query: 113 GGSHEDETNQILTDEMVIWFSSFH 136
                  T  +LTDE+++WFSSFH
Sbjct: 82  ------PTTILLTDELLLWFSSFH 89

[Close]

BLAST of CsaV3_3G000610 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-08
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 25  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 84
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 85  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 126
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]

BLAST of CsaV3_3G000610 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 49  EKALEGE--TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICR 108
           E+A+ GE   CC+CL+   N +           LPC H FHK CV++W  +   +CP+C+
Sbjct: 353 ERAISGEDAVCCICLAKYANNEE-------LRELPCSHFFHKECVDKWL-KINASCPLCK 412

Query: 109 YSMEGGGSHEDETNQ-ILT 125
              E G  + D T+Q ILT
Sbjct: 413 --SEVGEKNSDLTSQGILT 421

[Close]

BLAST of CsaV3_3G000610 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 26/75 (34.67%), Postives = 36/75 (48.00%), Query Frame = 0


Query: 34  PLPTD--DCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCV 93
           P P D  D   + L +  ++ +   C +CL      D           LPC HEFHK CV
Sbjct: 465 PAPNDVVDLLPIKLYTKSQSEDPSQCYICLVEYEEAD-------SIRTLPCHHEFHKTCV 524

Query: 94  ERWFEECRRTCPICR 107
           ++W +E  R CP+CR
Sbjct: 525 DKWLKEIHRVCPLCR 532

[Close]

BLAST of CsaV3_3G000610 vs. TAIR 10
Match: AT1G35630.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 21/65 (32.31%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 48  LEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRY 107
           LE++    TC +C+        D   G    +LPC H++H VC++ W   CR  CP+C+ 
Sbjct: 224 LEESSTSVTCAICID-------DYCVGEKLRILPCKHKYHAVCIDSWLGRCRSFCPVCKQ 281

Query: 108 SMEGG 113
           +   G
Sbjct: 284 NPRTG 281

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649999.1	1.0e-77	100.00	hypothetical protein Csa_010276, partial [Cucumis sativus]	[more]
KAA0052944.1	1.6e-70	92.36	E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiq...	[more]
XP_038906276.1	6.5e-64	85.11	E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]	[more]
KAG6577791.1	4.1e-58	77.86	Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015830.1	9.0e-58	77.86	Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_3G000610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91XF4	4.7e-09	31.68	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1	[more]
Q9H6Y7	6.2e-09	32.29	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1	[more]
Q5XIL0	1.1e-08	31.25	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 ...	[more]
Q9M2S6	5.8e-07	28.57	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 ...	[more]
Q8BP31	7.5e-07	37.66	RING finger protein 122 OS=Mus musculus OX=10090 GN=Rnf122 PE=2 SV=1	[more]

BLAST of CsaV3_3G000610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W7	5.0e-78	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 P...	[more]
A0A5D3CJ45	7.7e-71	92.36	E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1CW69	1.2e-42	65.73	E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7N2R4T7	4.9e-25	47.52	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1UIA7	4.1e-24	49.64	Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 ...	[more]

BLAST of CsaV3_3G000610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51325.1	9.4e-13	42.86	RING/U-box superfamily protein	[more]
AT3G55530.1	4.1e-08	28.57	RING/U-box superfamily protein	[more]
AT4G32600.1	7.0e-08	37.97	RING/U-box superfamily protein	[more]
AT5G45290.1	7.0e-08	34.67	RING/U-box superfamily protein	[more]
AT1G35630.1	1.2e-07	32.31	Protease-associated (PA) RING/U-box zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 57..105 e-value: 3.2E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 56..106 e-value: 1.4E-9 score: 38.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 57..106 score: 11.913911
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 44..122 e-value: 2.5E-14 score: 54.2
None	No IPR available	PANTHER	PTHR45977:SF13	GB\|AAF27103.1	coord: 39..116
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 39..116
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 49..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000610.1	CsaV3_3G000610.1	mRNA