CsaV3_2G008530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G008530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor bHLH146-like
Location	chr2: 4886652 .. 4887428 (-)
RNA-Seq Expression	CsaV3_2G008530
Synteny	CsaV3_2G008530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCAAAGTCTCTCCTTTTATATGCTTCAATTTTTTTTTTTTTTTGTAACATAACAAGAGAGTACTCCTTATTCTCTTCTCCAAAACCCATCGATATAGTTTTTCTTTAATTTCTTGCTATTTCTTCAAATTTTGTGTGAAGAAATGGTAAGGAAAATGGTGAGGAAAGGAAGAAGGGTATTTTCCATAGAACCAAGCAAAGTTGCATACACCATGTTTGAAAGAAACTATGTGAAACATTTGATGACATCTTTAGTCAAAATTTCTCATCAACAACAACAACAAAATTTTCGGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTAGTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGATCAACAAGTCCTTGGCAATGGCAATGAAAATGGTTTTGACTTTTCTGTTCAAACAGTGAAGAAAACTTCTCAAGAAAATTTAGGAAATGAAGAAGAAGATCATCATCATGAAGAAGAAGAAGAAGAAGAGGAAGAAATGGAAAATGGGTTGATGAAGCTGAGGAAAATTATTCCAGGTGGTGATAATTTTAGTATTGGAGGTAATTTGGATGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTCAATGTTCTTAGAGGTTTGGTTGAAACAAACACTTTTTTTTAATTTTTAAATTTGTGGAAAATTGAAACATTTTTTTAGCCATATAATTTATATATATATATATGAATTTTCATC

mRNA sequence

ATGGTAAGGAAAATGGTGAGGAAAGGAAGAAGGGTATTTTCCATAGAACCAAGCAAAGTTGCATACACCATGTTTGAAAGAAACTATGTGAAACATTTGATGACATCTTTAGTCAAAATTTCTCATCAACAACAACAACAAAATTTTCGGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTAGTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGATCAACAAGTCCTTGGCAATGGCAATGAAAATGGTTTTGACTTTTCTGTTCAAACAGTGAAGAAAACTTCTCAAGAAAATTTAGGAAATGAAGAAGAAGATCATCATCATGAAGAAGAAGAAGAAGAAGAGGAAGAAATGGAAAATGGGTTGATGAAGCTGAGGAAAATTATTCCAGGTGGTGATAATTTTAGTATTGGAGGTAATTTGGATGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTCAATGTTCTTAGAGGTTTGGTTGAAACAAACACTTTTTTTTAA

Coding sequence (CDS)

ATGGTAAGGAAAATGGTGAGGAAAGGAAGAAGGGTATTTTCCATAGAACCAAGCAAAGTTGCATACACCATGTTTGAAAGAAACTATGTGAAACATTTGATGACATCTTTAGTCAAAATTTCTCATCAACAACAACAACAAAATTTTCGGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTAGTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGATCAACAAGTCCTTGGCAATGGCAATGAAAATGGTTTTGACTTTTCTGTTCAAACAGTGAAGAAAACTTCTCAAGAAAATTTAGGAAATGAAGAAGAAGATCATCATCATGAAGAAGAAGAAGAAGAAGAGGAAGAAATGGAAAATGGGTTGATGAAGCTGAGGAAAATTATTCCAGGTGGTGATAATTTTAGTATTGGAGGTAATTTGGATGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTCAATGTTCTTAGAGGTTTGGTTGAAACAAACACTTTTTTTTAA

Protein sequence

MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVETNTFF*

Homology

[Close]

BLAST of CsaV3_2G008530 vs. NCBI nr
Match: XP_011648935.1 (transcription factor bHLH146 [Cucumis sativus] >KGN61154.1 hypothetical protein Csa_021305 [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 2.1e-94
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA
Sbjct: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120
           MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE
Sbjct: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120

Query: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180
           EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE
Sbjct: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180

Query: 181 TNTFF 186
           TNTFF
Sbjct: 181 TNTFF 185

[Close]

BLAST of CsaV3_2G008530 vs. NCBI nr
Match: XP_016901419.1 (PREDICTED: uncharacterized protein At4g30180 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 171/191 (89.53%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           MVRK+VRKGRRVFSIEP+KVAYTMF RNYVKHLMTSLVKISHQQQQQNF+KLV+FEVDMA
Sbjct: 1   MVRKIVRKGRRVFSIEPNKVAYTMFARNYVKHLMTSLVKISHQQQQQNFQKLVRFEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRD--QQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHH- 120
           MAQSASEFSWGIALKKKLLQRD  Q+VLGNG+ENGFDFS+QT+KK S +NLGNEEEDHH 
Sbjct: 61  MAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDHHE 120

Query: 121 --HEEEEEEEEEMENGLMKLRKIIPGGDNFSIGG-NLDEEDDLLKQTESYVKCLELQVNV 180
              EEEEEEEEEMENGLMKLRKIIPGGD+FSIGG NLDEEDDLLKQTESYVKCLELQVNV
Sbjct: 121 DEEEEEEEEEEEMENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKCLELQVNV 180

Query: 181 LRGLVETNTFF 186
           LRGLVETNTFF
Sbjct: 181 LRGLVETNTFF 191

[Close]

BLAST of CsaV3_2G008530 vs. NCBI nr
Match: XP_038877916.1 (transcription factor bHLH146-like [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 9.8e-60
Identity = 145/192 (75.52%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MVRKMVRKG-RRVFSIEPSKVAYTMFERNYVKHLMTSLVKIS------HQQQQQNFRKLV 60
           M R++VRKG RRVFS+EP+KVAYTMF RNYVKHLMTSLVKIS      HQQQ+QNF+K V
Sbjct: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKHLMTSLVKISHHHHQHHQQQEQNFQKFV 60

Query: 61  KFEVDMAMAQSAS-EFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNE 120
           KFEVDMAMAQSAS +F+WGIALKKKLLQRDQ     GNEN FDFS+QTV K SQENLG E
Sbjct: 61  KFEVDMAMAQSASDQFAWGIALKKKLLQRDQV----GNENDFDFSLQTV-KFSQENLGKE 120

Query: 121 EEDHHHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQV 180
           E     EEE EEE++ME+GLMKLRKIIPGG +F+I     E+DDLLKQTESYVKCLELQV
Sbjct: 121 E-----EEEAEEEKKMEHGLMKLRKIIPGGADFNI-----EDDDLLKQTESYVKCLELQV 177

Query: 181 NVLRGLVETNTF 185
           NVLRGLVETNTF
Sbjct: 181 NVLRGLVETNTF 177

[Close]

BLAST of CsaV3_2G008530 vs. NCBI nr
Match: XP_023538247.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-52
Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISH---QQQQQNFRKLVKFEV 60
           M R+++RK +RV S+EP+K+AYTMF RNYVK+LMTSL KISH   Q Q+QNF+KLVKFEV
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEV 60

Query: 61  DMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHH 120
           DMAMAQSA+EFSWG ALKKKLLQR+    GNG+ NGF FS+QTV K SQENL  E E+H 
Sbjct: 61  DMAMAQSATEFSWGNALKKKLLQRED---GNGS-NGFGFSLQTV-KFSQENLEREHEEH- 120

Query: 121 HEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRG 180
              EE +E ++ENGLMKLRKI+PGG N    G L EEDDL KQTESY+KCLELQVNVLR 
Sbjct: 121 ---EERKEPKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVLRC 172

Query: 181 LVETNT 184
           LV+TNT
Sbjct: 181 LVDTNT 172

[Close]

BLAST of CsaV3_2G008530 vs. NCBI nr
Match: XP_022938205.1 (transcription factor bHLH146-like [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 2.9e-51
Identity = 128/186 (68.82%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISH---QQQQQNFRKLVKFEV 60
           M R+++RK +RV S+EP+K+AYTMF RNYVK+LMTSL KISH   Q Q+QNF+KLVKFEV
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEV 60

Query: 61  DMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHH 120
           DMAMAQSA+EFSWG ALKKKLLQR+    GNG+ NGF  S+Q V K S+ENL  E+E+ H
Sbjct: 61  DMAMAQSATEFSWGNALKKKLLQRED---GNGS-NGFGLSLQRV-KFSRENLEREDEE-H 120

Query: 121 HEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRG 180
            E EE EE ++ENGLMKLRKI+PGG N    G L EEDDL KQTESY+KCLELQVNVLR 
Sbjct: 121 EEREEHEERKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVLRC 175

Query: 181 LVETNT 184
           LV+TNT
Sbjct: 181 LVDTNT 175

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 57/183 (31.15%), Postives = 97/183 (53.01%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           M R+++ + +RVFS+EP+K    +F R Y  HL+ +L K++    + + ++ VK EVDMA
Sbjct: 1   MERQIINRKKRVFSLEPNKNPSAVFTRKYTSHLVPALKKLN--MNKNSSKQTVKHEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120
           +A SA EF+W   L +KL                  S      TS  + G    +   +E
Sbjct: 61  LALSAQEFAWSRFLLQKL----------------SSSSNPTTTTSSSSDGIRILERPDKE 120

Query: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180
              EE  +E  L +L+K++PGG+  ++       +++L +  +Y+KCLELQ   L+ +V+
Sbjct: 121 GGNEEGGIEERLRELKKLLPGGEEMNV-------EEMLSEIGNYIKCLELQTIALKSIVQ 158

Query: 181 TNT 184
            +T
Sbjct: 181 DST 158

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL
Match: A0A0A0LJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.0e-94
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA
Sbjct: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120
           MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE
Sbjct: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120

Query: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180
           EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE
Sbjct: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180

Query: 181 TNTFF 186
           TNTFF
Sbjct: 181 TNTFF 185

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL
Match: A0A1S4DZN3 (uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.2e-83
Identity = 171/191 (89.53%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           MVRK+VRKGRRVFSIEP+KVAYTMF RNYVKHLMTSLVKISHQQQQQNF+KLV+FEVDMA
Sbjct: 1   MVRKIVRKGRRVFSIEPNKVAYTMFARNYVKHLMTSLVKISHQQQQQNFQKLVRFEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRD--QQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHH- 120
           MAQSASEFSWGIALKKKLLQRD  Q+VLGNG+ENGFDFS+QT+KK S +NLGNEEEDHH 
Sbjct: 61  MAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDHHE 120

Query: 121 --HEEEEEEEEEMENGLMKLRKIIPGGDNFSIGG-NLDEEDDLLKQTESYVKCLELQVNV 180
              EEEEEEEEEMENGLMKLRKIIPGGD+FSIGG NLDEEDDLLKQTESYVKCLELQVNV
Sbjct: 121 DEEEEEEEEEEEMENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKCLELQVNV 180

Query: 181 LRGLVETNTFF 186
           LRGLVETNTFF
Sbjct: 181 LRGLVETNTFF 191

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.4e-51
Identity = 128/186 (68.82%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISH---QQQQQNFRKLVKFEV 60
           M R+++RK +RV S+EP+K+AYTMF RNYVK+LMTSL KISH   Q Q+QNF+KLVKFEV
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEV 60

Query: 61  DMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHH 120
           DMAMAQSA+EFSWG ALKKKLLQR+    GNG+ NGF  S+Q V K S+ENL  E+E+ H
Sbjct: 61  DMAMAQSATEFSWGNALKKKLLQRED---GNGS-NGFGLSLQRV-KFSRENLEREDEE-H 120

Query: 121 HEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRG 180
            E EE EE ++ENGLMKLRKI+PGG N    G L EEDDL KQTESY+KCLELQVNVLR 
Sbjct: 121 EEREEHEERKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVLRC 175

Query: 181 LVETNT 184
           LV+TNT
Sbjct: 181 LVDTNT 175

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.1e-51
Identity = 128/188 (68.09%), Postives = 148/188 (78.72%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISH---QQQQQNFRKLVKFEV 60
           M R+++RK +RV S+EP K+AYTMF RNYVK+LMTSL KISH   Q QQQNF+KLVKFEV
Sbjct: 1   MGRQILRKRKRVLSLEPDKLAYTMFARNYVKYLMTSLPKISHHHQQHQQQNFQKLVKFEV 60

Query: 61  DMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDH- 120
           DMAMAQSA+EFSWG ALKKKLLQR+     NG+ NGF FS+    K S+ENL  E+E+H 
Sbjct: 61  DMAMAQSATEFSWGNALKKKLLQREDD---NGS-NGFGFSLPV--KFSRENLEREDEEHE 120

Query: 121 -HHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVL 180
            H E EE EE ++ENGLMKLRKI+PGG N    G L EEDDL KQTESY+KCLELQVNVL
Sbjct: 121 EHEEHEEREERKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVL 177

Query: 181 RGLVETNT 184
           R LV+TNT
Sbjct: 181 RCLVDTNT 177

[Close]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 7.9e-47
Identity = 114/184 (61.96%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           M R++VRK RRVFS+EP+K+ Y MF RNY K+LM SL KIS     QN +K+VKFEVDMA
Sbjct: 1   MGRQIVRKRRRVFSLEPNKLVYIMFARNYAKNLMASLSKIS--PNHQNLQKVVKFEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120
           MA SASEF+WG ALK+KLLQ+ +   GNG  N FDFS+QT+K + ++           EE
Sbjct: 61  MALSASEFAWGHALKQKLLQKQENGNGNG-RNSFDFSLQTLKFSREK----------EEE 120

Query: 121 EEEEEEEMENGLMKLRKIIPGGDNFS-IGGNLDEEDDLLKQTESYVKCLELQVNVLRGLV 180
           EEE++++MENGL+KLRKI+PGG+N +   G+L EEDDLLKQTESY+KCLELQVNVLR LV
Sbjct: 121 EEEDKKKMENGLVKLRKILPGGENNNDSNGDLLEEDDLLKQTESYIKCLELQVNVLRCLV 171

Query: 181 ETNT 184
           +TNT
Sbjct: 181 DTNT 171

[Close]

BLAST of CsaV3_2G008530 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-20
Identity = 66/190 (34.74%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKI-----SHQQQQQNFRKLVKF 60
           M R+++ K +RVFS++P+K    +F R YV HL+ +L KI     S +  +Q+  + VK 
Sbjct: 1   MERQIINKRKRVFSLQPNKNPKAVFARRYVSHLVPALKKINMNKSSSKTNKQSLEQTVKH 60

Query: 61  EVDMAMAQSASEFSWGIALKKKLLQR--DQQVLGNGNENGFDFSVQTVKKTSQENLGNEE 120
           EVDMA A SA EF+W   L++KLL    D  +  + + +      + ++++S+   G   
Sbjct: 61  EVDMAFALSAQEFAWSRFLQQKLLSSPYDDPISTSSSPS------EILERSSKRQGG--- 120

Query: 121 EDHHHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVN 180
           E H   +EEEE  E++  L +L+K++PGG+  ++       +++L +  SY+ CLELQ+ 
Sbjct: 121 EKHQDSDEEEEGGEIKKRLKELQKLLPGGEEMNM-------EEILSEIGSYIVCLELQMI 174

Query: 181 VLRGLVETNT 184
           VL+ +V+ NT
Sbjct: 181 VLKSIVQDNT 174

[Close]

BLAST of CsaV3_2G008530 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 57/183 (31.15%), Postives = 97/183 (53.01%), Query Frame = 0


Query: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDMA 60
           M R+++ + +RVFS+EP+K    +F R Y  HL+ +L K++    + + ++ VK EVDMA
Sbjct: 1   MERQIINRKKRVFSLEPNKNPSAVFTRKYTSHLVPALKKLN--MNKNSSKQTVKHEVDMA 60

Query: 61  MAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHEE 120
           +A SA EF+W   L +KL                  S      TS  + G    +   +E
Sbjct: 61  LALSAQEFAWSRFLLQKL----------------SSSSNPTTTTSSSSDGIRILERPDKE 120

Query: 121 EEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLRGLVE 180
              EE  +E  L +L+K++PGG+  ++       +++L +  +Y+KCLELQ   L+ +V+
Sbjct: 121 GGNEEGGIEERLRELKKLLPGGEEMNV-------EEMLSEIGNYIKCLELQTIALKSIVQ 158

Query: 181 TNT 184
            +T
Sbjct: 181 DST 158

The following BLAST results are available for this feature:

BLAST of CsaV3_2G008530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648935.1	2.1e-94	100.00	transcription factor bHLH146 [Cucumis sativus] >KGN61154.1 hypothetical protein ...	[more]
XP_016901419.1	1.1e-82	89.53	PREDICTED: uncharacterized protein At4g30180 [Cucumis melo]	[more]
XP_038877916.1	9.8e-60	75.52	transcription factor bHLH146-like [Benincasa hispida]	[more]
XP_023538247.1	5.8e-52	69.35	transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938205.1	2.9e-51	68.82	transcription factor bHLH146-like [Cucurbita moschata]	[more]

BLAST of CsaV3_2G008530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM5	2.2e-14	31.15	Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=...	[more]

BLAST of CsaV3_2G008530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA7	1.0e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1	[more]
A0A1S4DZN3	5.2e-83	89.53	uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 S...	[more]
A0A6J1FJ33	1.4e-51	68.82	transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 ...	[more]
A0A6J1I0E6	3.1e-51	68.09	transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE...	[more]
A0A6J1DIU0	7.9e-47	61.96	transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4...	[more]

BLAST of CsaV3_2G008530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18969.1	1.6e-20	34.74	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT4G30180.1	1.6e-15	31.15	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 3..86
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 100..183
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 100..183
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 3..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G008530.1	CsaV3_2G008530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated