CsaV3_2G005000 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G005000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 2714059 .. 2714372 (+)
RNA-Seq Expression	CsaV3_2G005000
Synteny	CsaV3_2G005000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTAGGCAGCGAGTGCGTTGTTCAATTACAACTCCTAGAATAGAACAAATTAATAGAAGCACCTTGGAGGTGTCCTACCAACTTCAGAACGCACAAGACATGCTTTTAGTTTCAGTAAGGTCCTTGTCGATATCTGTTAAAGAAGCTATTGCCTCGTTCGAGTACAACTTAATAAGCAGGGGGTTGAGGCACCAAATCTTGACGTTAGAGAATTCAGACCCAAATCTTGAAGCAACCACCTGGCTCCAGTGTTCCACTCAACAATTGTGGTTTTTATATTTATCAATTATATTATTTTAACTGATTAA

mRNA sequence

ATGCCATCTAGGCAGCGAGTGCGTTGTTCAATTACAACTCCTAGAATAGAACAAATTAATAGAAGCACCTTGGAGGTGTCCTACCAACTTCAGAACGCACAAGACATGCTTTTAGTTTCAGTAAGGTCCTTGTCGATATCTGTTAAAGAAGCTATTGCCTCGTTCGAGTACAACTTAATAAGCAGGGGGTTGAGGCACCAAATCTTGACGTTAGAGAATTCAGACCCAAATCTTGAAGCAACCACCTGGCTCCAGTGTTCCACTCAACAATTGTGGTTTTTATATTTATCAATTATATTATTTTAA

Coding sequence (CDS)

ATGCCATCTAGGCAGCGAGTGCGTTGTTCAATTACAACTCCTAGAATAGAACAAATTAATAGAAGCACCTTGGAGGTGTCCTACCAACTTCAGAACGCACAAGACATGCTTTTAGTTTCAGTAAGGTCCTTGTCGATATCTGTTAAAGAAGCTATTGCCTCGTTCGAGTACAACTTAATAAGCAGGGGGTTGAGGCACCAAATCTTGACGTTAGAGAATTCAGACCCAAATCTTGAAGCAACCACCTGGCTCCAGTGTTCCACTCAACAATTGTGGTTTTTATATTTATCAATTATATTATTTTAA

Protein sequence

MPSRQRVRCSITTPRIEQINRSTLEVSYQLQNAQDMLLVSVRSLSISVKEAIASFEYNLISRGLRHQILTLENSDPNLEATTWLQCSTQQLWFLYLSIILF*

Homology

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BLAST of CsaV3_2G005000 vs. NCBI nr
Match: KAE8651586.1 (hypothetical protein Csa_024011 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.4e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MPSRQRVRCSITTPRIEQINRSTLEVSYQLQNAQDMLLVSVRSLSISVKEAIASFEYNLI 60
           MPSRQRVRCSITTPRIEQINRSTLEVSYQLQNAQDMLLVSVRSLSISVKEAIASFEYNLI
Sbjct: 1   MPSRQRVRCSITTPRIEQINRSTLEVSYQLQNAQDMLLVSVRSLSISVKEAIASFEYNLI 60

Query: 61  SRGLRHQILTLENSDPNLEATTWLQCSTQQLWFLYLSIILF 102
           SRGLRHQILTLENSDPNLEATTWLQCSTQQLWFLYLSIILF
Sbjct: 61  SRGLRHQILTLENSDPNLEATTWLQCSTQQLWFLYLSIILF 101

The following BLAST results are available for this feature:

BLAST of CsaV3_2G005000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651586.1	3.4e-46	100.00	hypothetical protein Csa_024011 [Cucumis sativus]	[more]

BLAST of CsaV3_2G005000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G005000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G005000 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G005000.1	CsaV3_2G005000.1	mRNA