CsaV3_1G044160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G044160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Thioredoxin domain-containing protein
Location	chr1: 29381943 .. 29385141 (+)
RNA-Seq Expression	CsaV3_1G044160
Synteny	CsaV3_1G044160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATAAAAGAATGAATTCACCACATTTACAATCCTACCCCTGCAACCTTTCACTCAGTCCACAACCAAAGAATGAGCATTTAAGTCTTTTCTTATCCACCCATTCTCCACCACAATCCACATTTCTTAAATGACTAAAACACCCCTCACATTTGCCGCATCTCTCCCAAATCTCAAGTATAACATCGTAAATCCATCAACCTCCTCCTTCGACGTCTTGTCCTGCAGCAGCTTCGCTTCACTTTCTCCTCCGCCATTTCTGAACCTTTTCCCAATCACTCTCTCTCTTTCTCTTTCTCTCTCTCTTTTCCATGGCTTTACATTTCTCTCTCTCTCCTCCGTCGGTCAGATCGTCGCCGTCGTTTCCCTGCAGTGGAAGGCAGCCGATCGCCACACTTTCCGAATCGAAGAGTGGCTGCTTCAGTTCGAGGAGCTTGAGTCTCTCTAGTAGCAGAAGCATTGGTGTTTCCGGTAGGAATGGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGATACTTTCTGGCCCATTGTCAATGCCGCTGGTGATAAAACCGTTGTGCTCGACATGTACACCCAATGGTTTGTGTTTCTATGTCTCCATATGTCTTTGTTTCTTATTTGTGTTGTTTCTAACGTTATTGCATAGAATATGGTTTCGGATATGAATGTTCTTATAATTGTAGATTATTTCTGATTTACTGATTTAATTACGCGATGCTTATAGTAGAGTATGGATCTCGTGGTTTAATAAATTGGAAAGAAACATTGGTTTCATTTAGGCTTCTGTCTGTCAAATGATCAAATTTATTAAAGTAATTCCCCCTACAAGTTGATGCCACTTTTTTTTTTCTTTTACTATTGAGTTTGACTTTGATTAAAAAATTATCATAGGAAGTCAGTTTGTTTTCTTCTTCTCCTTTACACAATAATGAGAACTTGAAAACTGGGTTTATATATATATTTTTCAACTTAATATACGAAAATTTTGGACTTCGGGCGCATAAAGCGCAATAGTTTTTGAACAAGAAGTGTGGGTTTTTTTTGTCCTGTGAGGCACATTATATATATAAACATACTACATTAAGAAGGGAAAGAACAGTTGAAGTGGAAATGTGAAAAAGCAGACTTCTAATCCCAAGAAAGTTCTCATTTAGACTTTGGTAAATTCTCTATTTTTTAAATAATAAAAAAAGCCCCCAAGGGAGTGTCTTATTTTGTGAGCCTTGCCTTTTCAAGTAAGCCTTAAGCCTAGGCTCTCCCGGGAGGACATTTGGAGCAATATCAAGAGAAACTGTTTGAGGAGGCACATCTCACATTGAATGATTTTTTTCTAACGTTGCAGTTTTGGGAACAATATACAGTTGTAACATCTGCTAAATAAGTTCGAGACTTTCCAATAATGGGTATTCTAGCTACTGGTTTAGTCAAATTATTTTTTATTGCAAAGTATTTGGCATCAAGTCTATTTTAAACTTTGAAGAAATTATTTGGTTTCACCGCAAGGTGGTTGGCAGTTTTTTTTCCGTTAAATATAGAGTTCATTGGATTATAATTTTTTCAAGAAGTGGGGATGGGGATTCAAACTTGTGGCCTCTTGATGAATGAGATGGATATGCTTTAAGTACAAGCTACGTGATTGCTTGTGTCGTTTCCAATAACTTTGACATAGTTTTAATGTAATGTTTTCTGTCTTAAGCTATTTTGCTTCATCGGGCTGTGCCATTTGGTAACGGTGCCTTCCTAATGGTGATATGGTTTTATCCTGGCGTGGGAGTTTTTAGGAAAGAAAATTTGTAAGAATGAGAAACTGGTTATCTAGAAACACAACAGGATAGCTTGTTTATTTTAGATATAACTTATCTTACCCAAAAAAAAAATACTAGATTTAACATATCAAGTAAAAGAAAAAGTTATCGATTTAACAAACCTCATACAACAACTCAGAATAAACTTATTCGAATAATGTTATGTAACATAACGCAACTAAAATGTGCTTTGCCTCTATGTTATGACCTTTTGATTTTTCTTTTCTTTCCTTTAGCTTTTAAAAAATATTAATTGAGCTCTAGTAAGTTTAATTGGTACAAAAAGAACCTTTGCCTTTGACAGTCTTATTTTCTGGTAGAACTTTTATTTTTGCCTTATTGTTTCTTGTAATAACCCAATCCTCATGACTGTGGTGATTAATTTTAGTTCGAAAAAAACTTTCCTTGTGTTTGCTATATGCAATTTCAGACTGCTTGCGAGACTATGCATTTGTGAAAGTTCTAAGATTCATTATTTATTGTCTCTGTTTTTGGACTCACAAGCTTAACACCTTAATTAACTTTCTTTATTCATCCCTACATGGTACATTAAAGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGATTTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGATTGCAACATAGACAATAAGGTTCATATGGTCCCTAATTTCTTGCTGGAACTTAGGAATGTATTTTCATAATAGTTCATATAAGAAGTAAGAACATTGAATTATCTTTATTTGGCAGCCATTAGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAAAAGGTCGTTAAAGAAGTAACTGGAGCAAAGTTTGATGAGTTGGTTCATGCCATTGATGCTGTAAGATCCAGCTGAAAACTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTGTAAATTCAAATAATATGATGCAAGGAAGAGTATTCAGGACAGTTATTTATTTTACTCTATTAGTTTAATGATTTTGTGTACTGTCAAGTGTTAAGGAAAAAGCAGTTCAACCATGGGAAATGATTCTGTATATAGATGTGTGTACAATGACAGTTCCTACATATTCCAAAATTTACTTTGCTAAATACATTTTTTTATGAGTGGGTTTGAATGTTTTTATAATGGCTTTGGGTATGTTTCTGATTTCTGGTTTTTGGTTAGATTTTGGGTGACTTTTATTAGGTTTTAGTTGGTTTGTAGTGTTTGTTTGGGATGGCCTGTAAGAAGTGCTTTCAAATAAATGATAGTTGCAAATTTAATCCTTATATACAAAATAATTAAGTATATAGCAACATTTTTAAAAAAATTGTAAATCTAACAAAATTTG

mRNA sequence

ATGGCTTTACATTTCTCTCTCTCTCCTCCGTCGGTCAGATCGTCGCCGTCGTTTCCCTGCAGTGGAAGGCAGCCGATCGCCACACTTTCCGAATCGAAGAGTGGCTGCTTCAGTTCGAGGAGCTTGAGTCTCTCTAGTAGCAGAAGCATTGGTGTTTCCGGTAGGAATGGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGATACTTTCTGGCCCATTGTCAATGCCGCTGGTGATAAAACCGTTGTGCTCGACATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGATTTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGATTGCAACATAGACAATAAGCCATTAGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAAAAGGTCGTTAAAGAAGTAACTGGAGCAAAGTTTGATGAGTTGGTTCATGCCATTGATGCTGTAAGATCCAGCTGA

Coding sequence (CDS)

ATGGCTTTACATTTCTCTCTCTCTCCTCCGTCGGTCAGATCGTCGCCGTCGTTTCCCTGCAGTGGAAGGCAGCCGATCGCCACACTTTCCGAATCGAAGAGTGGCTGCTTCAGTTCGAGGAGCTTGAGTCTCTCTAGTAGCAGAAGCATTGGTGTTTCCGGTAGGAATGGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGATACTTTCTGGCCCATTGTCAATGCCGCTGGTGATAAAACCGTTGTGCTCGACATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGATTTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTTGATTGCAACATAGACAATAAGCCATTAGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAAAAGGTCGTTAAAGAAGTAACTGGAGCAAAGTTTGATGAGTTGGTTCATGCCATTGATGCTGTAAGATCCAGCTGA

Protein sequence

MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS*

Homology

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BLAST of CsaV3_1G044160 vs. NCBI nr
Match: XP_004139092.1 (thioredoxin F-type, chloroplastic [Cucumis sativus] >KGN66631.1 hypothetical protein Csa_007307 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

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BLAST of CsaV3_1G044160 vs. NCBI nr
Match: XP_008443649.1 (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 170/180 (94.44%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MALHFSLSPPSVRSSPSFPCSGRQPI  LS+SKSGCFSSRSLS+SSSRSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFD+LVHAID VRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

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BLAST of CsaV3_1G044160 vs. NCBI nr
Match: XP_038878300.1 (thioredoxin F-type, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MALH SLSPPSVRSSPSFPCSGRQ IA LS+SKSGCFSS+SLS++SSRSIGVS  N SFK
Sbjct: 58  MALHLSLSPPSVRSSPSFPCSGRQSIAALSDSKSGCFSSKSLSITSSRSIGVSSGNRSFK 117

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLE AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 118 VNSSLEIAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 177

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFD+LVHAID VRSS
Sbjct: 178 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIDTVRSS 237

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BLAST of CsaV3_1G044160 vs. NCBI nr
Match: XP_022157062.1 (thioredoxin F-type, chloroplastic-like [Momordica charantia])

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 158/180 (87.78%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MAL  SLSPPS+RSSPS PC+G+QPIA +S+SKS CFSSRSLS++SSRSIG+SG N +FK
Sbjct: 1   MALRLSLSPPSIRSSPSLPCNGKQPIAAVSDSKSTCFSSRSLSVTSSRSIGISGGNRTFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC+VMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCRVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFD+LVHAI+AVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIEAVRSS 180

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BLAST of CsaV3_1G044160 vs. NCBI nr
Match: XP_022988428.1 (thioredoxin F-type, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 311.2 bits (796), Expect = 5.8e-81
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MAL  SLSPPS+RSSPS PCSGRQPIA LS++KSGCFSS+ LS++SSRSIGVS  N SFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           +NSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  INSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFD+LV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

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BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot
Match: P29450 (Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.6e-52
Identity = 118/186 (63.44%), Postives = 140/186 (75.27%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVS----GRN 60
           MAL+   SP  + ++     S  +P    S + S   +S S S+  S+ +G+      R+
Sbjct: 1   MALNLCTSPKWIGTTVFDSASSSKP----SLASSFSTTSFSSSILCSKRVGLQRLSLRRS 60

Query: 61  GSFKVNSSLETAG--ATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 120
            S  V SSLETAG   TVG+VTEVNKDTFWPIVNAAGDKTVVLDM+T+WCGPCKV+AP +
Sbjct: 61  ISVSVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLY 120

Query: 121 QDLSEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAI 180
           ++LS+KYLDVVFLKLDCN DNK LAKELGIKVVPTFKILKD K+VKEVTGAKFD+LV AI
Sbjct: 121 EELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 180

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BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot
Match: Q9XFH9 (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 111/182 (60.99%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSP--SFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRN-G 60
           ++L  + SP S R SP  S    G  P+       +   +++    S    +  SGR  G
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  SFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDL 120
           S  V  SLET   TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+APK+++L
Sbjct: 63  SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKEL 122

Query: 121 SEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAV 180
           SEKY D+VFLKLDCN DNKPLAKELGI+VVPTFKILKD KVVKEVTGAK+++L+ AI+A 
Sbjct: 123 SEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAA 182

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BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot
Match: Q9XFH8 (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 9   PPSVRSSPSFPCSGRQPIATLSESKSGC---FSSRSLSLSSSRSIGVSGRNGSFKVNSSL 68
           P S+R SPS P +          S+  C   +S    +     S+    R  S  V  SL
Sbjct: 2   PLSLRLSPS-PTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDSRKRGDSSVVRCSL 61

Query: 69  ETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEKYLDVV 128
           ET   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY DVV
Sbjct: 62  ETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVV 121

Query: 129 FLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 181
           FLKLDCN DN+PLAKELGI+VVPTFKILKD KVVKEVTGAK+D+LV AI+  RS+
Sbjct: 122 FLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot
Match: O48897 (Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 107/178 (60.11%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 9   PPSVRSSPSFPCSGRQPIATLSESKSGC-FSSRSLSLSSSRSIGVSG-----RNGSFKVN 68
           P S+R +PS P +        S +K  C   S S   +++R IG+       R  S  V 
Sbjct: 2   PLSLRLAPS-PTALSPTTGGFSPAKKQCRIPSYSGVATTTRRIGLCSLDYVKRGDSSVVR 61

Query: 69  SSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEKYL 128
            SL+T   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY 
Sbjct: 62  CSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYE 121

Query: 129 DVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 181
           DVVFLKLDCN +N+PLAKELGI+VVPTFKILKD +VVKEVTGAK+D+LV AI+  RS+
Sbjct: 122 DVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSA 178

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot
Match: O81332 (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-46
Identity = 111/193 (57.51%), Postives = 132/193 (68.39%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSES--------KSGCFSSRSLSLSSSRSIGV 60
           MA+  SLS  S   S + P +   P  +  +           G  + + +       + +
Sbjct: 1   MAMQLSLSHQSWAKSLASPITSFDPARSPPKRVELGPNCLNGGATAGKLMREKVGERMRM 60

Query: 61  SGRNGSFKVNSSLETA-GA----TVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC 120
           SGR  S  V +SLETA GA     VG+VTEV+KDTFWPI N AGDK VVLDMYTQWCGPC
Sbjct: 61  SGR--SCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPC 120

Query: 121 KVMAPKFQDLSEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKF 180
           KVMAPK+Q+L+EK LDVVFLKLDCN +NKPLAKELGI+VVPTFKILK  K+V EVTGAKF
Sbjct: 121 KVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKF 180

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BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL
Match: A0A0A0M340 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL
Match: A0A1S3B9B3 (thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.9e-88
Identity = 170/180 (94.44%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MALHFSLSPPSVRSSPSFPCSGRQPI  LS+SKSGCFSSRSLS+SSSRSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFD+LVHAID VRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL
Match: A0A6J1DTK2 (thioredoxin F-type, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111023873 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 158/180 (87.78%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MAL  SLSPPS+RSSPS PC+G+QPIA +S+SKS CFSSRSLS++SSRSIG+SG N +FK
Sbjct: 1   MALRLSLSPPSIRSSPSLPCNGKQPIAAVSDSKSTCFSSRSLSVTSSRSIGISGGNRTFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC+VMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCRVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKD KVVKEVTGAKFD+LVHAI+AVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIEAVRSS 180

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL
Match: A0A6J1JM96 (thioredoxin F-type, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111485679 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MAL  SLSPPS+RSSPS PCSGRQPIA LS++KSGCFSS+ LS++SSRSIGVS  N SFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           +NSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  INSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFD+LV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

[Close]

BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL
Match: A0A6J1HAM5 (thioredoxin F-type, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461638 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 157/180 (87.22%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60
           MAL  SLSPPS+RSSPS PCSGRQPIA L ++KSGCFSS+ LS++SSRSIGVS  N SFK
Sbjct: 1   MALRISLSPPSIRSSPSLPCSGRQPIAALPDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60

Query: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120
           +NSSLE AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  INSSLEIAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFD+LV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180

[Close]

BLAST of CsaV3_1G044160 vs. TAIR 10
Match: AT5G16400.1 (thioredoxin F2 )

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-51
Identity = 111/182 (60.99%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 1   MALHFSLSPPSVRSSP--SFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRN-G 60
           ++L  + SP S R SP  S    G  P+       +   +++    S    +  SGR  G
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  SFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDL 120
           S  V  SLET   TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+APK+++L
Sbjct: 63  SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKEL 122

Query: 121 SEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAV 180
           SEKY D+VFLKLDCN DNKPLAKELGI+VVPTFKILKD KVVKEVTGAK+++L+ AI+A 
Sbjct: 123 SEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAA 182

[Close]

BLAST of CsaV3_1G044160 vs. TAIR 10
Match: AT3G02730.1 (thioredoxin F-type 1 )

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-48
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 9   PPSVRSSPSFPCSGRQPIATLSESKSGC---FSSRSLSLSSSRSIGVSGRNGSFKVNSSL 68
           P S+R SPS P +          S+  C   +S    +     S+    R  S  V  SL
Sbjct: 2   PLSLRLSPS-PTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDSRKRGDSSVVRCSL 61

Query: 69  ETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEKYLDVV 128
           ET   +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY DVV
Sbjct: 62  ETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVV 121

Query: 129 FLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 181
           FLKLDCN DN+PLAKELGI+VVPTFKILKD KVVKEVTGAK+D+LV AI+  RS+
Sbjct: 122 FLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175

[Close]

BLAST of CsaV3_1G044160 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-14
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 73  GQVTEVNKDTFW--PIVNAAGDKT-VVLDMYTQWCGPCKVMAPKFQDLSEKYLDVVFLKL 132
           GQV   +    W   +  A   KT VV+D    WCGPC+ +AP F DL++K  +V+FLK+
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 133 DCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAI 175
           D + + K +A +  I+ +PTF  LK+ K++ +V GAK DEL   I
Sbjct: 66  DTD-ELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]

BLAST of CsaV3_1G044160 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 92  DKTVVLDMYTQWCGPCKVMAPKFQDLSEKYLDVVFLKLDCNIDNKP-LAKELGIKVVPTF 151
           +K +V+D    WCGPC+++ P    +++K+ DV F+KLD  +D  P +AKE  +  +PTF
Sbjct: 47  NKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLD--VDELPDVAKEFNVTAMPTF 106

Query: 152 KILKDKKVVKEVTGAKFDELVHAIDAVRS 180
            ++K  K ++ + GAK DEL   +  +R+
Sbjct: 107 VLVKRGKEIERIIGAKKDELEKKVSKLRA 133

[Close]

BLAST of CsaV3_1G044160 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 93  KTVVLDMYTQWCGPCKVMAPKFQDLSEKYLDVVFLKLDCNIDNKPLAKELGIKVVPTFKI 152
           K +V+D    WC PC+ +AP F DL++K+LDVVF K+D + +   +A+E  ++ +PTF  
Sbjct: 28  KLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVD-ELNTVAEEFKVQAMPTFIF 87

Query: 153 LKDKKVVKEVTGAKFDELV 172
           +K+ ++ + V GA  +E++
Sbjct: 88  MKEGEIKETVVGAAKEEII 105

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139092.1	2.9e-93	100.00	thioredoxin F-type, chloroplastic [Cucumis sativus] >KGN66631.1 hypothetical pro...	[more]
XP_008443649.1	1.4e-87	94.44	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]	[more]
XP_038878300.1	1.6e-83	90.56	thioredoxin F-type, chloroplastic-like [Benincasa hispida]	[more]
XP_022157062.1	5.2e-82	87.78	thioredoxin F-type, chloroplastic-like [Momordica charantia]	[more]
XP_022988428.1	5.8e-81	88.33	thioredoxin F-type, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G044160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29450	2.6e-52	63.44	Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9XFH9	1.9e-50	60.99	Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 ...	[more]
Q9XFH8	1.5e-47	61.14	Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 ...	[more]
O48897	2.5e-47	60.11	Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1	[more]
O81332	3.7e-46	57.51	Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 ...	[more]

BLAST of CsaV3_1G044160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M340	1.4e-93	100.00	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650...	[more]
A0A1S3B9B3	6.9e-88	94.44	thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 P...	[more]
A0A6J1DTK2	2.5e-82	87.78	thioredoxin F-type, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JM96	2.8e-81	88.33	thioredoxin F-type, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1114856...	[more]
A0A6J1HAM5	3.1e-80	87.22	thioredoxin F-type, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]

BLAST of CsaV3_1G044160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16400.1	1.3e-51	60.99	thioredoxin F2	[more]
AT3G02730.1	1.1e-48	61.14	thioredoxin F-type 1	[more]
AT3G51030.1	6.5e-14	40.95	thioredoxin H-type 1	[more]
AT5G39950.1	1.2e-12	37.08	thioredoxin 2	[more]
AT5G42980.1	3.6e-12	37.97	thioredoxin 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 143..154 score: 33.89 coord: 95..103 score: 31.23 coord: 103..112 score: 65.5
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 59..179 e-value: 1.4E-34 score: 120.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..180
None	No IPR available	PANTHER	PTHR10438:SF382	THIOREDOXIN F2, CHLOROPLASTIC	coord: 1..180
None	No IPR available	CDD	cd02947	TRX_family	coord: 81..175 e-value: 1.11606E-26 score: 95.3176
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 75..175 e-value: 1.1E-22 score: 80.0
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 54..179 score: 13.01145
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 96..114
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 67..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044160.1	CsaV3_1G044160.1	mRNA