CsaV3_1G008310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G008310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 5232750 .. 5233886 (+)
RNA-Seq ExpressionCsaV3_1G008310
SyntenyCsaV3_1G008310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATATGGGGTAGGACCCTGCTTCTCTCCTAATCTTCTCCGCTTTCTCATTAATGTTAAGCTTCCACCTGGTTACAAATCATTGGGGGTGGAAAGTGCAAATCTTCTTCTCCACATGTTCTCATCTGCCAGTCCTTCGAGCGGTTCTATATGTTTCTCTAATTACTTTCAGCATTGAATGGAATTTGTCTATGAATTCCAGTCTTCAGATGTATTTGTGCAGATGAAAGAAATATGGTACATGTGCATTGTATAATTAGAAAGTCCTTTATGACTGAACTATAATTTAAATATTCTTGATCAATAAATCTATGTTCTTGCCTACAATATTATAATTGGAATTGTTTTAGTTCCATCCCTTATGAATCTACTAGATGCCATAATGTTAATTTATCTGTATTGATGTGGTTTACTGATTCTGGTGACAAGGAAATTTAGTATGTAAATGAATACTGATGAGAATGATGACTTTTATTAATTTTGCAATGTTATCTTCAAAAGTTTGCCTTATGCATCAGCCTTCAGCTTTTTGTATATTATGGAGTCAGAGATGTTGATTTTGCTCATCTTTCAACTTTGACTGATCAATTTGATGCAGAATTAGCTTCTCTTCAAAACGAAATTACTCTTTAAACTCAAATATAAGGTGAAGTTATTTGAAGTTCGTTCAACCATTATCGATAAATTCAGAAGCAATCTTCTTGCTGAAGTAATGTAAGTCTCTTCCTGCTTCCTTCATGATGATAACAAGACCAATACATATAGAAAGATCCTTAAATTTCTTTATTCTGAAGTTCGTTGTTCTTGTTTGTTTGTCCTTTGTTTTCTTTGTTTTCTTTTACGTTTCTATTGGACGCTTGTATCTTTGAACAATTTTCTTTTCATGTGTCAGTTAAAGCTGGATCTTGTTCTTAGAACTCAGGGACATAGTGATATCCAGTTTGTAAAAGTTCTTTTTTGTTATGTTTTTTAATTGATTCACTCATCTATTATTTTACATTCTTTCATGTGTTAACCAAATGTTTATACAGAACAGAATTCCACTTCCCTTCTCTTCAAGGAATTGGATAAGCCACAGCATGTGGGTGACGTTAGTAGTCATTGGAGAGCAAATAATCAGCACGTGAGCTGA

mRNA sequence

ATGTCTCAATATGGGGTAGGACCCTGCTTCTCTCCTAATCTTCTCCGCTTTCTCATTAATGTTAAGCTTCCACCTGGTTACAAATCATTGGGGGTGGAAAGTGCAAATCTTCTTCTCCACATGTTCTCATCTGCCAGTCCTTCGAGCGAACAGAATTCCACTTCCCTTCTCTTCAAGGAATTGGATAAGCCACAGCATGTGGGTGACGTTAGTAGTCATTGGAGAGCAAATAATCAGCACGTGAGCTGA

Coding sequence (CDS)

ATGTCTCAATATGGGGTAGGACCCTGCTTCTCTCCTAATCTTCTCCGCTTTCTCATTAATGTTAAGCTTCCACCTGGTTACAAATCATTGGGGGTGGAAAGTGCAAATCTTCTTCTCCACATGTTCTCATCTGCCAGTCCTTCGAGCGAACAGAATTCCACTTCCCTTCTCTTCAAGGAATTGGATAAGCCACAGCATGTGGGTGACGTTAGTAGTCATTGGAGAGCAAATAATCAGCACGTGAGCTGA

Protein sequence

MSQYGVGPCFSPNLLRFLINVKLPPGYKSLGVESANLLLHMFSSASPSSEQNSTSLLFKELDKPQHVGDVSSHWRANNQHVS*
Homology
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BLAST of CsaV3_1G008310 vs. NCBI nr
Match: KGN64300.2 (hypothetical protein Csa_014016 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 7.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MSQYGVGPCFSPNLLRFLINVKLPPGYKSLGVESANLLLHMFSSASPSSEQNSTSLLFKE 60
          MSQYGVGPCFSPNLLRFLINVKLPPGYKSLGVESANLLLHMFSSASPSSEQNSTSLLFKE
Sbjct: 1  MSQYGVGPCFSPNLLRFLINVKLPPGYKSLGVESANLLLHMFSSASPSSEQNSTSLLFKE 60

Query: 61 LDKPQHVGDVSSHWRANNQHVS 83
          LDKPQHVGDVSSHWRANNQHVS
Sbjct: 61 LDKPQHVGDVSSHWRANNQHVS 82

The following BLAST results are available for this feature:
BLAST of CsaV3_1G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64300.27.3e-39100.00hypothetical protein Csa_014016 [Cucumis sativus][more]
BLAST of CsaV3_1G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008310.1CsaV3_1G008310.1mRNA