CsGy6G023130 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G023130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	splicing factor 3B subunit 6-like protein
Location	Gy14Chr6: 23403741 .. 23404118 (+)
RNA-Seq Expression	CsGy6G023130
Synteny	CsGy6G023130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

mRNA sequence

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Coding sequence (CDS)

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Protein sequence

MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVSTKDK*

Homology

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BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot
Match: Q9FMP4 (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g12190 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-56
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot
Match: Q9Y3B4 (Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-41
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot
Match: P59708 (Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-41
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot
Match: Q9VRV7 (Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.7e-40
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ + RLPPEVNR+L+VRNLP+ ITS+EMYDIFGK+GAIRQIR+G   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVSTKD 125
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++EL  ++ KY + T +
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

[Close]

BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot
Match: Q8ITY4 (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-37
Identity = 68/108 (62.96%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 13  RLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAK 72
           +LPPEVNR+L+++NLP+ IT+EEMY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 73  TAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 121
           TA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   +L  ++E+YG+
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119

[Close]

BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_008449647.1 (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo] >XP_011657610.1 splicing factor 3B subunit 6-like protein [Cucumis sativus] >XP_038902876.1 splicing factor 3B subunit 6-like protein [Benincasa hispida] >XP_038902877.1 splicing factor 3B subunit 6-like protein [Benincasa hispida] >KAA0061763.1 Pre-mRNA branch site p14-like protein [Cucumis melo var. makuwa] >TYJ96105.1 Pre-mRNA branch site p14-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (637), Expect = 1.98e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_022152995.1 (splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 splicing factor 3B subunit 6-like protein [Cucurbita moschata] >XP_022995172.1 splicing factor 3B subunit 6-like protein [Cucurbita maxima] >XP_023533539.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo] >XP_023533540.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo] >KAG6605944.1 Splicing factor 3B subunit 6-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035890.1 Splicing factor 3B subunit 6-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (632), Expect = 1.15e-82
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_027331036.1 (splicing factor 3B subunit 6-like protein [Abrus precatorius])

HSP 1 Score: 238 bits (607), Expect = 7.22e-79
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_024639474.1 (splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unknown [Medicago truncatula] >AET00189.2 Pre-mRNA branch site p14-like protein [Medicago truncatula] >AFK49453.1 unknown [Medicago truncatula] >RHN57553.1 putative nucleotide-binding alpha-beta plait domain-containing protein [Medicago truncatula])

HSP 1 Score: 236 bits (603), Expect = 2.94e-78
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_021888985.1 (splicing factor 3B subunit 6-like protein [Carica papaya])

HSP 1 Score: 236 bits (602), Expect = 4.18e-78
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELA+MQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL
Match: A0A5D3BCB3 (Pre-mRNA branch site p14-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00670 PE=4 SV=1)

HSP 1 Score: 249 bits (637), Expect = 9.58e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL
Match: A0A0A0KI93 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430680 PE=4 SV=1)

HSP 1 Score: 249 bits (637), Expect = 9.58e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL
Match: A0A1S3BMI0 (splicing factor 3B subunit 6-like protein OS=Cucumis melo OX=3656 GN=LOC103491466 PE=4 SV=1)

HSP 1 Score: 249 bits (637), Expect = 9.58e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL
Match: A0A6J1JY22 (splicing factor 3B subunit 6-like protein OS=Cucurbita maxima OX=3661 GN=LOC111490790 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 5.55e-83
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL
Match: A0A6J1DFH9 (splicing factor 3B subunit 6-like protein OS=Momordica charantia OX=3673 GN=LOC111020599 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 5.55e-83
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 125
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of CsGy6G023130 vs. TAIR 10
Match: AT5G12190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-57
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of CsGy6G023130 vs. TAIR 10
Match: AT2G14870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 9  KGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDI 68
          K N RLPPEV R+L++ NLPF+ITSE+ YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 69 YDAKTAVDHL 79
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78

[Close]

BLAST of CsGy6G023130 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 22  LFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 81
           LFV  LP++ T EE+ + F K+G I ++ +  +KDT   RG AFV+Y     AK A+D L
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288

Query: 82  SGFNVANRYLIVLYYQQAKMSKK 102
                  R L +L  +   MS K
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAK 311

[Close]

BLAST of CsGy6G023130 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 5   SLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVV 64
           S    G   +PP  N +LF++NLP   TS  +  +F +Y   ++IR+   K   G AFV 
Sbjct: 145 SFQPSGQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAFVE 204

Query: 65  YEDIYDAKTAVDHLSGFNVANRYLIVLYY 94
           YED   A  A+  L GF +  +  +V+ +
Sbjct: 205 YEDDVQASIAMQPLQGFKITPQNPMVISF 229

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BLAST of CsGy6G023130 vs. TAIR 10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 19 NRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 78
          +R ++V NLP +I   E+ D+F KYG + QI +       G AFV +ED  DA  A+   
Sbjct: 6  SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65

Query: 79 SGFNVANRYLIV 91
           G++    +L V
Sbjct: 66 DGYDFDGHHLRV 77

The following BLAST results are available for this feature:

BLAST of CsGy6G023130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP4	4.6e-56	87.20	Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
Q9Y3B4	1.4e-41	66.09	Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1	[more]
P59708	1.4e-41	66.09	Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1	[more]
Q9VRV7	4.7e-40	64.96	Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV...	[more]
Q8ITY4	2.8e-37	62.96	Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C...	[more]

BLAST of CsGy6G023130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449647.1	1.98e-83	100.00	PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo] >XP_01165761...	[more]
XP_022152995.1	1.15e-82	98.40	splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 ...	[more]
XP_027331036.1	7.22e-79	96.80	splicing factor 3B subunit 6-like protein [Abrus precatorius]	[more]
XP_024639474.1	2.94e-78	96.00	splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unkn...	[more]
XP_021888985.1	4.18e-78	96.00	splicing factor 3B subunit 6-like protein [Carica papaya]	[more]

BLAST of CsGy6G023130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCB3	9.58e-84	100.00	Pre-mRNA branch site p14-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0KI93	9.58e-84	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430680 PE=4 SV...	[more]
A0A1S3BMI0	9.58e-84	100.00	splicing factor 3B subunit 6-like protein OS=Cucumis melo OX=3656 GN=LOC10349146...	[more]
A0A6J1JY22	5.55e-83	98.40	splicing factor 3B subunit 6-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1DFH9	5.55e-83	98.40	splicing factor 3B subunit 6-like protein OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of CsGy6G023130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12190.1	3.3e-57	87.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G14870.1	4.3e-25	71.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	1.4e-07	38.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	5.3e-07	33.71	U2 small nuclear ribonucleoprotein B	[more]
AT4G02430.2	1.2e-06	36.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 21..91 e-value: 1.4E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..88 e-value: 5.9E-18 score: 64.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..95 score: 16.670687
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..110 e-value: 3.1E-22 score: 81.2
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 8..117
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 8..117
IPR034150	SF3B6, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 18..94 e-value: 1.1648E-53 score: 160.86
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023130.2	CsGy6G023130.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding