CsGy6G017432 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G017432
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 18129589 .. 18129879 (-)
RNA-Seq ExpressionCsGy6G017432
SyntenyCsGy6G017432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTCCAGTGATGGCCTTTGTTTTAGTCTCATTAACCTTCTTTTTTCTTAGCTTCCCAATTCTCTCTACATCTGCTGCCCAGCTTCACCCATTGCCTTCTCTTTATCACACAAGAATTGTCCCTCTTCCGCAACCATCACCGTCGTCACTTTTGCCATCGTATGAATTTGAACTGCAAGTAAGGAGAAGGAGAAGGCGGGTACGTTCTCCGCCGCCACCACCACCGCCGCCCAGGTTCCAGTGGCCAAGAAGGCAAACCCGTAGATCACCTCCACCTCCTTTCTAA

mRNA sequence

ATGAAGTCTCCAGTGATGGCCTTTGTTTTAGTCTCATTAACCTTCTTTTTTCTTAGCTTCCCAATTCTCTCTACATCTGCTGCCCAGCTTCACCCATTGCCTTCTCTTTATCACACAAGAATTGTCCCTCTTCCGCAACCATCACCGTCGTCACTTTTGCCATCGTATGAATTTGAACTGCAAGTAAGGAGAAGGAGAAGGCGGGTACGTTCTCCGCCGCCACCACCACCGCCGCCCAGGTTCCAGTGGCCAAGAAGGCAAACCCGTAGATCACCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGAAGTCTCCAGTGATGGCCTTTGTTTTAGTCTCATTAACCTTCTTTTTTCTTAGCTTCCCAATTCTCTCTACATCTGCTGCCCAGCTTCACCCATTGCCTTCTCTTTATCACACAAGAATTGTCCCTCTTCCGCAACCATCACCGTCGTCACTTTTGCCATCGTATGAATTTGAACTGCAAGTAAGGAGAAGGAGAAGGCGGGTACGTTCTCCGCCGCCACCACCACCGCCGCCCAGGTTCCAGTGGCCAAGAAGGCAAACCCGTAGATCACCTCCACCTCCTTTCTAA

Protein sequence

MKSPVMAFVLVSLTFFFLSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSSLLPSYEFELQVRRRRRRVRSPPPPPPPPRFQWPRRQTRRSPPPPF*
Homology
[Close]
BLAST of CsGy6G017432 vs. NCBI nr
Match: KGN54132.2 (hypothetical protein Csa_021653 [Cucumis sativus])

HSP 1 Score: 121 bits (303), Expect = 2.83e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 6  MAFVLVSLTFFFLSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSSLLPSYEFELQVRRR 65
          MAFVLVSLTFFFLSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSSLLPSYEFELQVRRR
Sbjct: 1  MAFVLVSLTFFFLSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSSLLPSYEFELQVRRR 60

Query: 66 RRRVR 70
          RRRVR
Sbjct: 61 RRRVR 65

[Close]
BLAST of CsGy6G017432 vs. NCBI nr
Match: KAG6578901.1 (hypothetical protein SDJN03_23349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 1.63e-20
Identity = 61/111 (54.95%), Postives = 69/111 (62.16%), Query Frame = 0 

Query: 6   MAFVLVSLTFFFLSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSS-------------- 65
           MAFVLV+L  FF  F I + SAA+LHP PSLYH RIVPLP P P                
Sbjct: 1   MAFVLVALILFF-HFSIPAASAARLHPPPSLYHARIVPLPPPPPPRFPIPSISAARPHPL 60

Query: 66  ------LLPSYEFELQVRRRRRRVRSPPPPPPPPRFQWPRRQTRRSPPPPF 96
                 LLP +++EL  RRRR R    PPPPPPPRFQWP+R TR+SPPPPF
Sbjct: 61  PPPPPPLLP-HQYELLARRRRFRS---PPPPPPPRFQWPKRHTRKSPPPPF 106

The following BLAST results are available for this feature:
BLAST of CsGy6G017432 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G017432 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54132.22.83e-33100.00hypothetical protein Csa_021653 [Cucumis sativus][more]
KAG6578901.11.63e-2054.95hypothetical protein SDJN03_23349, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsGy6G017432 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy6G017432 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017432.1CsGy6G017432.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen