CsGy6G005000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G005000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 4615993 .. 4616328 (-)
RNA-Seq Expression	CsGy6G005000
Synteny	CsGy6G005000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCACCATTGGCTTATCTATTTCTTGCAATTTTGTTGGCAGTGGCATCCTTCTCTCCGAGCTCACTGTTGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

mRNA sequence

ATGGCGCCACCATTGGCTTATCTATTTCTTGCAATTTTGTTGGCAGTGGCATCCTTCTCTCCGAGCTCACTGTTGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

Coding sequence (CDS)

ATGGCGCCACCATTGGCTTATCTATTTCTTGCAATTTTGTTGGCAGTGGCATCCTTCTCTCCGAGCTCACTGTTGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

Protein sequence

MAPPLAYLFLAILLAVASFSPSSLLIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF*

Homology

[Close]

BLAST of CsGy6G005000 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 188 bits (478), Expect = 7.61e-60
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 17  ASFSPSSLLIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 76
           ASFSPSSL IAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER
Sbjct: 1   ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 60

Query: 77  KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111
           KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF
Sbjct: 61  KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 95

[Close]

BLAST of CsGy6G005000 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 9.94e-57
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MAPPLAYLFLAILLAVASFSPSSLLIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPA 60
           MAPPLAYLFLAI LA+ SFSPSSL I+ATA PS+GIPYPPPLPR LLFHNDHSSLP SPA
Sbjct: 1   MAPPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPRSLLFHNDHSSLPQSPA 60

Query: 61  AEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111
           AEEYPAK  +RVNGERKDKC+EAPRNGNKDAK +KDPWPKCPV KSPPPPF
Sbjct: 61  AEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

[Close]

BLAST of CsGy6G005000 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.06e-69
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MAPPLAYLFLAILLAVASFSPSSLLIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPA 60
           MAPPLAYLFLAILLAVASFSPSSL IAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPA
Sbjct: 1   MAPPLAYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPA 60

Query: 61  AEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111
           AEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF
Sbjct: 61  AEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

[Close]

BLAST of CsGy6G005000 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 4.81e-57
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MAPPLAYLFLAILLAVASFSPSSLLIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPA 60
           MAPPLAYLFLAI LA+ SFSPSSL I+ATA PS+GIPYPPPLPR LLFHNDHSSLP SPA
Sbjct: 1   MAPPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPRSLLFHNDHSSLPQSPA 60

Query: 61  AEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111
           AEEYPAK  +RVNGERKDKC+EAPRNGNKDAK +KDPWPKCPV KSPPPPF
Sbjct: 61  AEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of CsGy6G005000 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G005000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646677.1	7.61e-60	98.95	hypothetical protein Csa_023590, partial [Cucumis sativus]	[more]
KAA0054906.1	9.94e-57	85.59	hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22...	[more]

BLAST of CsGy6G005000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF9	1.06e-69	99.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1	[more]
A0A5D3DGG9	4.81e-57	85.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy6G005000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005000.1	CsGy6G005000.1	mRNA