Homology
BLAST of CsGy6G002295 vs. ExPASy Swiss-Prot
Match:
O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)
HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+SEDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSR+QL EFELCVLGNLCPETVEEA+AMVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 139
DEAIEKMLNDLSL+KRFE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
BLAST of CsGy6G002295 vs. ExPASy Swiss-Prot
Match:
O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 56/137 (40.88%), Postives = 93/137 (67.88%), Query Frame = 0
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++LEH+ +Q + S + ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNY 69
Query: 62 VKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PSL +GR D+
Sbjct: 70 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGRFEDE 129
Query: 122 EAIEKMLNDLSLIKRFE 139
E ++++L+D+ + F+
Sbjct: 130 E-LQQILDDIQTKRSFQ 141
BLAST of CsGy6G002295 vs. ExPASy Swiss-Prot
Match:
Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)
HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 56/137 (40.88%), Postives = 93/137 (67.88%), Query Frame = 0
Query: 2 SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQY 61
+G+ EE+A++L EF A+ L+N EV ++LEH+ +Q + S + ++S+VF K+L Y
Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNY 69
Query: 62 VKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDD 121
RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PSL +GR D+
Sbjct: 70 TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGRFEDE 129
Query: 122 EAIEKMLNDLSLIKRFE 139
E ++++L+D+ + F+
Sbjct: 130 E-LQQILDDIQTKRSFQ 141
BLAST of CsGy6G002295 vs. ExPASy Swiss-Prot
Match:
Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 55/147 (37.41%), Postives = 90/147 (61.22%), Query Frame = 0
Query: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSEDPTNQ 63
+EEE+ LK + AK L+N EV+++LEH+ + Q L + + N
Sbjct: 12 QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71
Query: 64 VSQVFEKSLQYVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVP 123
+ + F K+L Y ++FSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++P
Sbjct: 72 IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131
Query: 124 SLKTKGRVHDDEAIEKMLNDLSLIKRF 138
SLK ++ DDE ++ +L++LS +++F
Sbjct: 132 SLK---KMEDDE-LQAILDELSNLRKF 154
BLAST of CsGy6G002295 vs. ExPASy Swiss-Prot
Match:
Q9VEA5 (DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 GN=Rpb4 PE=2 SV=5)
HSP 1 Score: 87.8 bits (216), Expect = 1.0e-16
Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = 0
Query: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRF 65
+E+AA+L+ EF A+ L+ EV ++L+H+ + Q S D + S+VF K+ Y F
Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 70
Query: 66 SRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIE 125
++KN + + R +L + +L +FEL LGNLCPE EEA A++PSL +GR D+E +
Sbjct: 71 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSL--EGRFEDEE-LR 130
Query: 126 KMLNDL 132
++L+D+
Sbjct: 131 QILDDI 131
BLAST of CsGy6G002295 vs. NCBI nr
Match:
XP_004138390.1 (DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_008456795.1 PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis melo] >XP_011656444.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >KAA0051957.1 DNA-directed RNA polymerase II subunit 4 [Cucumis melo var. makuwa] >KGN45845.1 hypothetical protein Csa_005663 [Cucumis sativus] >TYK04594.1 DNA-directed RNA polymerase II subunit 4 [Cucumis melo var. makuwa])
HSP 1 Score: 268 bits (686), Expect = 1.75e-90
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIKRFE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
BLAST of CsGy6G002295 vs. NCBI nr
Match:
XP_038884885.1 (DNA-directed RNA polymerase II subunit 4 [Benincasa hispida])
HSP 1 Score: 268 bits (685), Expect = 2.49e-90
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIKRFE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
BLAST of CsGy6G002295 vs. NCBI nr
Match:
XP_022939401.1 (DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022939402.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022993195.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_022993196.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_023549816.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023549818.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo] >KAG6578503.1 DNA-directed RNA polymerase II subunit 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016067.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 264 bits (675), Expect = 8.35e-89
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI+MVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
BLAST of CsGy6G002295 vs. NCBI nr
Match:
XP_022133507.1 (DNA-directed RNA polymerase II subunit 4 [Momordica charantia])
HSP 1 Score: 263 bits (672), Expect = 2.39e-88
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
BLAST of CsGy6G002295 vs. NCBI nr
Match:
XP_022954766.1 (DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954778.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022990067.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990068.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990070.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_023536652.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 263 bits (671), Expect = 3.40e-88
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKAKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
BLAST of CsGy6G002295 vs. ExPASy TrEMBL
Match:
A0A5D3C019 (DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002310 PE=4 SV=1)
HSP 1 Score: 268 bits (686), Expect = 8.49e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIKRFE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
BLAST of CsGy6G002295 vs. ExPASy TrEMBL
Match:
A0A0A0K7V5 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014650 PE=4 SV=1)
HSP 1 Score: 268 bits (686), Expect = 8.49e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIKRFE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
BLAST of CsGy6G002295 vs. ExPASy TrEMBL
Match:
A0A1S3C4R9 (DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496636 PE=4 SV=1)
HSP 1 Score: 268 bits (686), Expect = 8.49e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIKRFE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
BLAST of CsGy6G002295 vs. ExPASy TrEMBL
Match:
A0A6J1JVN3 (DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489290 PE=4 SV=1)
HSP 1 Score: 264 bits (675), Expect = 4.04e-89
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI+MVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
BLAST of CsGy6G002295 vs. ExPASy TrEMBL
Match:
A0A6J1FFS7 (DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111445330 PE=4 SV=1)
HSP 1 Score: 264 bits (675), Expect = 4.04e-89
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI+MVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 138
DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
BLAST of CsGy6G002295 vs. TAIR 10
Match:
AT5G09920.1 (RNA polymerase II, Rpb4, core protein )
HSP 1 Score: 260.4 bits (664), Expect = 8.3e-70
Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 0
Query: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+SEDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60
Query: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
YVKRFSRYKNPDAVRQVRE+LSR+QL EFELCVLGNLCPETVEEA+AMVPSLKTKGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 121 DEAIEKMLNDLSLIKRFE 139
DEAIEKMLNDLSL+KRFE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
BLAST of CsGy6G002295 vs. TAIR 10
Match:
AT4G15950.1 (RNA polymerase II, Rpb4, core protein )
HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 0
Query: 21 AKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREV 80
A+C+M+CE IL+ QL +SEDP+ ++ ++++L YV+ Y NP +VR+V E
Sbjct: 89 AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148
Query: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE 139
L Y +++ E+CV+ N E+V+E +A +PSLKTK V ++ ++ L +LS +K+ E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTKKEV-INQPLQDALEELSKLKKSE 205
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O48890 | 1.2e-68 | 93.48 | DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB... | [more] |
O15514 | 1.8e-21 | 40.88 | DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE... | [more] |
Q9D7M8 | 1.8e-21 | 40.88 | DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P... | [more] |
Q54S04 | 1.1e-18 | 37.41 | DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689... | [more] |
Q9VEA5 | 1.0e-16 | 38.89 | DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 G... | [more] |
Match Name | E-value | Identity | Description | |
XP_004138390.1 | 1.75e-90 | 100.00 | DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_008456795.1 PREDI... | [more] |
XP_038884885.1 | 2.49e-90 | 99.28 | DNA-directed RNA polymerase II subunit 4 [Benincasa hispida] | [more] |
XP_022939401.1 | 8.35e-89 | 97.10 | DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022939402... | [more] |
XP_022133507.1 | 2.39e-88 | 97.10 | DNA-directed RNA polymerase II subunit 4 [Momordica charantia] | [more] |
XP_022954766.1 | 3.40e-88 | 97.10 | DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DN... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3C019 | 8.49e-91 | 100.00 | DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A0A0K7V5 | 8.49e-91 | 100.00 | RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014650 PE=4... | [more] |
A0A1S3C4R9 | 8.49e-91 | 100.00 | DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496636... | [more] |
A0A6J1JVN3 | 4.04e-89 | 97.10 | DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC... | [more] |
A0A6J1FFS7 | 4.04e-89 | 97.10 | DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita moschata OX=3662 GN=L... | [more] |
Match Name | E-value | Identity | Description | |
AT5G09920.1 | 8.3e-70 | 93.48 | RNA polymerase II, Rpb4, core protein | [more] |
AT4G15950.1 | 1.3e-17 | 38.14 | RNA polymerase II, Rpb4, core protein | [more] |