CsGy5G025210 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G025210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 29547795 .. 29548423 (-)
RNA-Seq Expression	CsGy5G025210
Synteny	CsGy5G025210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTGTCGTCACAGTAACCAAGCAAGCATTATAAATACAAGCCCTTTAGTTCGAATCAAAATTAACTACCCACAGCATGGTACAAAATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGGTACGTACGTCCTCAGCCTGCACCCGCAGTACTACTCTATCTCTGTAATATCAACGATCTTCATCTCTTTAACTACTTCTTAAACACAAAATCTTTTTTCTATGTATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

mRNA sequence

TGATTGTCGTCACAGTAACCAAGCAAGCATTATAAATACAAGCCCTTTAGTTCGAATCAAAATTAACTACCCACAGCATGGTACAAAATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Coding sequence (CDS)

ATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Protein sequence

MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGICFVSFIVRHFW*

Homology

[Close]

BLAST of CsGy5G025210 vs. NCBI nr
Match: XP_011655810.1 (uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_008386 [Cucumis sativus])

HSP 1 Score: 289 bits (739), Expect = 1.81e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 141
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of CsGy5G025210 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (577), Expect = 1.01e-73
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62

Query: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122

Query: 122 VGLVFVGGSLGICFVSFIVRHFW 141
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 123 VGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of CsGy5G025210 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 181 bits (459), Expect = 8.85e-56
Identity = 100/145 (68.97%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASA  PSFH FH+P S RRRP SDHR APRCHG  GDEEN+KDIV+ANLTVLR RMEDL
Sbjct: 1   MASARFPSFH-FHSPVSTRRRP-SDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGG----CFDGKKMKNCGLISGCLEVVSRVG 120
           RKKER IP+  R+ G+E  D+G RYL   DG      FDGK +K   LI+GCLEVV+ VG
Sbjct: 61  RKKERRIPLPARRGGLE-FDNGWRYLSMSDGAKFDRSFDGKILKKFALIAGCLEVVTTVG 120

Query: 121 GAVGLVFVGGSLGICFVSFIVRHFW 141
           GAVGLVFVGGSLGIC V+ +VRHFW
Sbjct: 121 GAVGLVFVGGSLGICLVALLVRHFW 142

[Close]

BLAST of CsGy5G025210 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 149 bits (375), Expect = 5.94e-43
Identity = 90/143 (62.94%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCH-GRAGDEENEKDIVEANLTVLRTRMEDL 61
           +SAPL SFH F +PSS RRRP +DHR APRCH G + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 6   SSAPLCSFH-FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 65

Query: 62  RKKERGIPIQIRQRGMEELDDGGRYLW----KLDGGCFDGKKMKNCGLISGCLEVVSRVG 121
           RKKER IP      G  E D+   Y+     KLD  C + K +KN  LIS CLEV+S  G
Sbjct: 66  RKKERRIPAS---GGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISMAG 125

Query: 122 GAVGLVFVGGSLGICFVSFIVRH 139
           GAVGLV VGGSLGIC VS ++RH
Sbjct: 126 GAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of CsGy5G025210 vs. NCBI nr
Match: XP_038893301.1 (uncharacterized protein LOC120082131 isoform X2 [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 1.65e-29
Identity = 64/101 (63.37%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1  MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
          MASA  PSFH FH+P S RRRP SDHR APRCHG  GDEEN+KDIV+ANLTVLR RMEDL
Sbjct: 1  MASARFPSFH-FHSPVSTRRRP-SDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDL 60

Query: 61 RKKERGIPIQIRQRGME-----ELDDGGRYLWKLDGGCFDG 96
          RKKER IP+  R+ G+E      +  GG Y W+    CF G
Sbjct: 61 RKKERRIPLPARRGGLEFDNGWRVLGGGDYGWRCSWACFCG 99

[Close]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 289 bits (739), Expect = 8.76e-99
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 141
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 4.88e-74
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62

Query: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122

Query: 122 VGLVFVGGSLGICFVSFIVRHFW 141
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 123 VGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 4.88e-74
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62

Query: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122

Query: 122 VGLVFVGGSLGICFVSFIVRHFW 141
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 123 VGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.88e-43
Identity = 90/143 (62.94%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCH-GRAGDEENEKDIVEANLTVLRTRMEDL 61
           +SAPL SFH F +PSS RRRP +DHR APRCH G + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 6   SSAPLCSFH-FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 65

Query: 62  RKKERGIPIQIRQRGMEELDDGGRYLW----KLDGGCFDGKKMKNCGLISGCLEVVSRVG 121
           RKKER IP      G  E D+   Y+     KLD  C + K +KN  LIS CLEV+S  G
Sbjct: 66  RKKERRIPAS---GGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISMAG 125

Query: 122 GAVGLVFVGGSLGICFVSFIVRH 139
           GAVGLV VGGSLGIC VS ++RH
Sbjct: 126 GAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL
Match: A0A067FF64 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036804mg PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.67e-06
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 38  DEENEKDIVEANLTVLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGK 97
           DE    DIV+ANL+ LR R+E+++KKE              L++G  Y    D      +
Sbjct: 36  DEGKRADIVDANLSTLRKRIEEVKKKEMLCC---------RLENGWNYKRSYDDHY---R 95

Query: 98  KMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGICFVSFIVR 138
             K   ++ G ++V+  VGGAVG VF+ GSL +  VSF+V 
Sbjct: 96  NRKRADILYGLVQVMGFVGGAVGFVFLSGSLCLFLVSFLVN 124

The following BLAST results are available for this feature:

BLAST of CsGy5G025210 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G025210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655810.1	1.81e-98	100.00	uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical ...	[more]
XP_008446686.1	1.01e-73	85.31	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc...	[more]
XP_038893300.1	8.85e-56	68.97	uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]	[more]
XP_022150638.1	5.94e-43	62.94	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
XP_038893301.1	1.65e-29	63.37	uncharacterized protein LOC120082131 isoform X2 [Benincasa hispida]	[more]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6	8.76e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]
A0A5A7SXL4	4.88e-74	85.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFP0	4.88e-74	85.31	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
A0A6J1D9Z1	2.88e-43	62.94	uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A067FF64	3.67e-06	36.63	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036804mg PE=4 SV=1	[more]

BLAST of CsGy5G025210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..40
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 1..141
None	No IPR available	PANTHER	PTHR38225:SF3	SUBFAMILY NOT NAMED	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G025210.2	CsGy5G025210.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane