CsGy4G014250 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G014250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 19112534 .. 19113484 (-)
RNA-Seq Expression	CsGy4G014250
Synteny	CsGy4G014250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGTTCTCGGAGATCAAGTCCTCCCAAGAGGGGCAGGGGATAAGTACTGTTAAAGCCAAGAGAACCGATGCCCGAATTATGTTTGTACCTATAGTTGAAAAACAATAACTTTCATTTGAATCTCACTTGTTATTACACTTTCAAGCCATATACAATATATGTTATATCTATTGGAGTCTACTAATTATCATCAGCTCCCTTATCTTTCCTTCTCTTTCTTCTGTCACCTATACAGGCCCTCACCACTTACTGTGGTTGGTCATGCTACTATCTTACCACCATTAAAATTATATATCTAGAAAGAAAAAAAAAAGGCATGGAATAATTTAGAACATCTGAAATGGGAAATTAAAACCATTTTTTCTCCATACTCTCAAGCCATCCACCGTTAGATAAAAAAAAAAAAAAAAAAAAAAAGAACTGTGGACATCAATGATAAATCATGGACAATAACAGTAGACTGATAGTGACACAAGTAACTCTGTCCTGTCATATTTTGGACAGTAAATCCATGAAAAAATTTAAATTTCGAAAAGAAAAATCCCCCTTTTAAAAACTGCAGAAAGCAAATAAACACAAAATTCAAATCCGACAAAATAAAATGATATGGAAAATAGGTGGGTTGGAGGAAGGGGATCTGTAGTGTGTGTTCTTTTTGTTTGGATGTAAAGGAGTCCGACACGAGTCGTGGTCAAGTGTGGGATCCAAAGCAAGGACTGGGACACCTCGGAGCCGCTCCATCCTTCAAACACGAGATCCTTGAGTCACAACTGGGGCCCTAATACAAGGTGTCTCACAGAAACCATTGACTTCTTTGCTTCGGTGTGTACCGTGGCTAAGGCTCGGATCTGGACACTCAGTCAAACAAACCACTGGTCTGGTTGTAGGGTCGGGTGTGAAAAGTCAAAGCCAGAAGTAGACAAATCTTTGCTCACTTTGAAGTAA

mRNA sequence

ATGGATAAGTTCTCGGAGATCAAGTCCTCCCAAGAGGGGCAGGGGATAAGTACTGTTAAAGCCAAGAGAACCGATGCCCGAATTATGAGTCCGACACGAGTCGTGGTCAAGTGTGGGATCCAAAGCAAGGACTGGGACACCTCGGAGCCGCTCCATCCTTCAAACACGAGATCCTTGAGTCACAACTGGGGCCCTAATACAAGGTGTCTCACAGAAACCATTGACTTCTTTGCTTCGGTGTGTACCGTGGCTAAGGCTCGGATCTGGACACTCAGTCAAACAAACCACTGGTCTGGTTGTAGGGTCGGGTGTGAAAAGTCAAAGCCAGAAGTAGACAAATCTTTGCTCACTTTGAAGTAA

Coding sequence (CDS)

ATGGATAAGTTCTCGGAGATCAAGTCCTCCCAAGAGGGGCAGGGGATAAGTACTGTTAAAGCCAAGAGAACCGATGCCCGAATTATGAGTCCGACACGAGTCGTGGTCAAGTGTGGGATCCAAAGCAAGGACTGGGACACCTCGGAGCCGCTCCATCCTTCAAACACGAGATCCTTGAGTCACAACTGGGGCCCTAATACAAGGTGTCTCACAGAAACCATTGACTTCTTTGCTTCGGTGTGTACCGTGGCTAAGGCTCGGATCTGGACACTCAGTCAAACAAACCACTGGTCTGGTTGTAGGGTCGGGTGTGAAAAGTCAAAGCCAGAAGTAGACAAATCTTTGCTCACTTTGAAGTAA

Protein sequence

MDKFSEIKSSQEGQGISTVKAKRTDARIMSPTRVVVKCGIQSKDWDTSEPLHPSNTRSLSHNWGPNTRCLTETIDFFASVCTVAKARIWTLSQTNHWSGCRVGCEKSKPEVDKSLLTLK*

Homology

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BLAST of CsGy4G014250 vs. NCBI nr
Match: KAE8649535.1 (hypothetical protein Csa_017947 [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 6.27e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MDKFSEIKSSQEGQGISTVKAKRTDARIMSPTRVVVKCGIQSKDWDTSEPLHPSNTRSLS 60
           MDKFSEIKSSQEGQGISTVKAKRTDARIMSPTRVVVKCGIQSKDWDTSEPLHPSNTRSLS
Sbjct: 1   MDKFSEIKSSQEGQGISTVKAKRTDARIMSPTRVVVKCGIQSKDWDTSEPLHPSNTRSLS 60

Query: 61  HNWGPNTRCLTETIDFFASVCTVAKARIWTLSQTNHWSGCRVGCEKSKPEVDKSLLTLK 119
           HNWGPNTRCLTETIDFFASVCTVAKARIWTLSQTNHWSGCRVGCEKSKPEVDKSLLTLK
Sbjct: 61  HNWGPNTRCLTETIDFFASVCTVAKARIWTLSQTNHWSGCRVGCEKSKPEVDKSLLTLK 119

The following BLAST results are available for this feature:

BLAST of CsGy4G014250 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G014250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649535.1	6.27e-84	100.00	hypothetical protein Csa_017947 [Cucumis sativus]	[more]

BLAST of CsGy4G014250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy4G014250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G014250.2	CsGy4G014250.2	mRNA