CsGy4G002625 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G002625
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Poly(A)-specific ribonuclease
Location	Gy14Chr4: 1669401 .. 1669577 (+)
RNA-Seq Expression	CsGy4G002625
Synteny	CsGy4G002625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

mRNA sequence

ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

Coding sequence (CDS)

ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

Protein sequence

MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTYY*

Homology

[Close]

BLAST of CsGy4G002625 vs. NCBI nr
Match: KAE8649090.1 (hypothetical protein Csa_014788 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 3.26e-25
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Sbjct: 287 MRLAELLEVNDTIFNGGSDSLLIASACAKMKKLKLSRENADGFLYGFQYRIQGYKTY 343

[Close]

BLAST of CsGy4G002625 vs. NCBI nr
Match: XP_004151393.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.06e-21
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Sbjct: 203 RLAELLDVNDTVFSGGSDSLLIALAYVKMKKLKLSSENTGGFLYGFQYRIRGYKTF 258

[Close]

BLAST of CsGy4G002625 vs. NCBI nr
Match: KAA0044544.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.50e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFHYRIRGYRTF 258

[Close]

BLAST of CsGy4G002625 vs. NCBI nr
Match: XP_008454486.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 7.71e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

[Close]

BLAST of CsGy4G002625 vs. NCBI nr
Match: KAA0044541.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.43e-18
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RL ELL VNDTIFN GSDSLLIALAYAKMKK LK S +  DGFLYGF YRIQGY+T+
Sbjct: 169 RLVELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSPKITDGFLYGFHYRIQGYRTF 225

[Close]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A0A0KYV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011095 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 2.04e-28
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
          MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Sbjct: 1  MRLAELLEVNDTIFNGGSDSLLIASACAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57

[Close]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A0A0KTU4 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.11e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Sbjct: 203 RLAELLDVNDTVFSGGSDSLLIALAYVKMKKLKLSSENTGGFLYGFQYRIRGYKTF 258

[Close]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.66e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFHYRIRGYRTF 258

[Close]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.73e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

[Close]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.73e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

The following BLAST results are available for this feature:

BLAST of CsGy4G002625 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G002625 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649090.1	3.26e-25	94.74	hypothetical protein Csa_014788 [Cucumis sativus]	[more]
XP_004151393.1	1.06e-21	82.14	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]	[more]
KAA0044544.1	5.50e-19	80.70	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]
XP_008454486.1	7.71e-19	80.70	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039....	[more]
KAA0044541.1	2.43e-18	78.95	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYV8	2.04e-28	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011095 PE=4 SV=1	[more]
A0A0A0KTU4	5.11e-22	82.14	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV...	[more]
A0A5A7TN62	2.66e-19	80.70	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D333	3.73e-19	80.70	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	3.73e-19	80.70	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]

BLAST of CsGy4G002625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G002625.1	CsGy4G002625.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity