CsGy4G002625 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G002625
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPoly(A)-specific ribonuclease
LocationGy14Chr4: 1669401 .. 1669577 (+)
RNA-Seq ExpressionCsGy4G002625
SyntenyCsGy4G002625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

mRNA sequence

ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

Coding sequence (CDS)

ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTTTCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA

Protein sequence

MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTYY*
Homology
[Close]
BLAST of CsGy4G002625 vs. NCBI nr
Match: KAE8649090.1 (hypothetical protein Csa_014788 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 3.26e-25
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1   MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Sbjct: 287 MRLAELLEVNDTIFNGGSDSLLIASACAKMKKLKLSRENADGFLYGFQYRIQGYKTY 343

[Close]
BLAST of CsGy4G002625 vs. NCBI nr
Match: XP_004151393.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.06e-21
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Sbjct: 203 RLAELLDVNDTVFSGGSDSLLIALAYVKMKKLKLSSENTGGFLYGFQYRIRGYKTF 258

[Close]
BLAST of CsGy4G002625 vs. NCBI nr
Match: KAA0044544.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.50e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFHYRIRGYRTF 258

[Close]
BLAST of CsGy4G002625 vs. NCBI nr
Match: XP_008454486.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 7.71e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

[Close]
BLAST of CsGy4G002625 vs. NCBI nr
Match: KAA0044541.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.43e-18
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RL ELL VNDTIFN GSDSLLIALAYAKMKK LK S +  DGFLYGF YRIQGY+T+
Sbjct: 169 RLVELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSPKITDGFLYGFHYRIQGYRTF 225

[Close]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A0A0KYV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011095 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 2.04e-28
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 1  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
          MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Sbjct: 1  MRLAELLEVNDTIFNGGSDSLLIASACAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57

[Close]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A0A0KTU4 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.11e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Sbjct: 203 RLAELLDVNDTVFSGGSDSLLIALAYVKMKKLKLSSENTGGFLYGFQYRIRGYKTF 258

[Close]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.66e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFHYRIRGYRTF 258

[Close]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.73e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

[Close]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.73e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 2   RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY 57
           RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Sbjct: 202 RLAELLNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYRTF 258

The following BLAST results are available for this feature:
BLAST of CsGy4G002625 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G002625 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649090.13.26e-2594.74hypothetical protein Csa_014788 [Cucumis sativus][more]
XP_004151393.11.06e-2182.14putative CCR4-associated factor 1 homolog 8 [Cucumis sativus][more]
KAA0044544.15.50e-1980.70putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa][more]
XP_008454486.17.71e-1980.70PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.... [more]
KAA0044541.12.43e-1878.95putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa][more]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYV82.04e-2894.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011095 PE=4 SV=1[more]
A0A0A0KTU45.11e-2282.14Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV... [more]
A0A5A7TN622.66e-1980.70Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3D3333.73e-1980.70Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3BY953.73e-1980.70Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1[more]
BLAST of CsGy4G002625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G002625.1CsGy4G002625.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043928 exonucleolytic catabolism of deadenylated mRNA
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0005634 nucleus
cellular_component GO:0000932 P-body
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity