Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATGTCTCAAGGGATTTGGAGTATAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTATTGGAATTGAAATGTTAAAGGTATACTATACATATATACTTCATCTCCCATCTTGTGCTTTCTAAAGATGAGCTTGTGATTTACTTCATGATTACTAAGCTAGCTATATGAGAGGGGGAGTTTTTAGATATGTTGGACATTTTCATTTAAACATATCTACATCTTGATAAAACTCAATATATCAAAATATATATGAGGCGATAAAAATATATTTTTCCTCTAAATAATGCAATAAATATGTCAACCAAACTATACATGCATACCTTATCTTATTTAAAAATTCAATCAAATGGTTTTTGGTCGAAATATAATGTGTAATTATCGATATCAAATATATTTGATTTTATAAGAAAACCAACCTAATATCCTTTTATCATTATTTCTATTTATATTTGTACAAGCTTTAAAATCTCATAATTTTCATCGACATCAACATTTAATTCTCGAGTCAAGATAATAATAATCATGAATAAAGACACCATTTAAGTTCTTTGGTACAGGACAATAATAATTTCATTAATACAGACAAAGGCATATGAATGATAAATACATGAAAAGGGGAATTATTTGGAAATATAGTGAGTGAGTGATTAATGAATTAACTTTGGTATTTTAATTTATCAGGGAATGAAGAGAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
mRNA sequence
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATGTCTCAAGGGATTTGGAGTATAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTATTGGAATTGAAATGTTAAAGGGAATGAAGAGAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
Coding sequence (CDS)
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATGTCTCAAGGGATTTGGAGTATAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTATTGGAATTGAAATGTTAAAGGGAATGAAGAGAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
Protein sequence
MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP*
Homology
BLAST of CsGy3G002700 vs. ExPASy Swiss-Prot
Match:
Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)
HSP 1 Score: 49.3 bits (116), Expect = 3.9e-05
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0
Query: 106 EVGEDMVVMDYAQPHRKPPIHNEK 130
E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85
BLAST of CsGy3G002700 vs. NCBI nr
Match:
XP_011650407.1 (uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical protein Csa_010787 [Cucumis sativus])
HSP 1 Score: 259 bits (661), Expect = 6.27e-87
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60
MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK
Sbjct: 1 MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60
Query: 61 NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH 120
NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH
Sbjct: 61 NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH 120
Query: 121 RKPPIHNEKP 130
RKPPIHNEKP
Sbjct: 121 RKPPIHNEKP 130
BLAST of CsGy3G002700 vs. NCBI nr
Match:
XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])
HSP 1 Score: 179 bits (455), Expect = 1.31e-55
Identity = 99/129 (76.74%), Postives = 113/129 (87.60%), Query Frame = 0
Query: 3 MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKN 62
MPY FLILL FSSTLHAC+A LRFF+SS+FVSRI E HS+SQGIW+ DQ E SF+++
Sbjct: 1 MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRI-EPHSISQGIWA---DQPERSFEES 60
Query: 63 NNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHR 122
N+D + + KE I+GIEMLKGMK+ GSRLVMEFPMKEKV+NSKENEVGEDMVVMDYAQPHR
Sbjct: 61 NSDKLSY-KEIIVGIEMLKGMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHR 120
Query: 123 KPPIHNEKP 130
KPPIHNEKP
Sbjct: 121 KPPIHNEKP 124
BLAST of CsGy3G002700 vs. NCBI nr
Match:
XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])
HSP 1 Score: 175 bits (443), Expect = 9.11e-54
Identity = 99/130 (76.15%), Postives = 113/130 (86.92%), Query Frame = 0
Query: 3 MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKN 62
MPY FLILL FSSTLHAC+A LRFF+SS+FVSRI E HS+SQGIW+ DQ E SF+++
Sbjct: 1 MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRI-EPHSISQGIWA---DQPERSFEES 60
Query: 63 NNDNILHNKENIIGIEMLK-GMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH 122
N+D + + KE I+GIEMLK GMK+ GSRLVMEFPMKEKV+NSKENEVGEDMVVMDYAQPH
Sbjct: 61 NSDKLSY-KEIIVGIEMLKQGMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPH 120
Query: 123 RKPPIHNEKP 130
RKPPIHNEKP
Sbjct: 121 RKPPIHNEKP 125
BLAST of CsGy3G002700 vs. NCBI nr
Match:
XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia])
HSP 1 Score: 104 bits (260), Expect = 6.05e-26
Identity = 74/135 (54.81%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 1 MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFD 60
MA P ILL STLHACDA RL+ F+ SN VSR+ L + Q DQ +
Sbjct: 1 MATPSLLFILLL--STLHACDACHRLQLFEYSNPVSRLGLLAPIPQ---EFRTDQP---E 60
Query: 61 KNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKEK--VMNSKENEVGEDMVVMD 120
++ N NI+H + IGI +LKGMK+ RL MEF MKEK +M+ +ENEVGEDMVVMD
Sbjct: 61 RSLNKNIIHKVSSSVEIGIGILKGMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMD 120
Query: 121 YAQPHRKPPIHNEKP 130
YAQPHRKPPIHN+KP
Sbjct: 121 YAQPHRKPPIHNKKP 126
BLAST of CsGy3G002700 vs. NCBI nr
Match:
XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 99.8 bits (247), Expect = 6.10e-24
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 0
Query: 6 FFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDN 65
FFL LLF S+ LHACDA L+ SS S + +S G + ++ K+N+ +
Sbjct: 7 FFLALLFLSTFLHACDARLLKLCHSSRLESCL-----ISPGFRTNQLERSLDESKSNDVS 66
Query: 66 ILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE--------KVMNSKENEVGEDMVVMDYA 125
+ N +GIE+LKGMK+ RL ME P+++ KV+NS+ENEVGEDMVVMDYA
Sbjct: 67 SMEN----VGIEILKGMKKL-RRLAMELPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYA 126
Query: 126 QPHRKPPIHNEKP 130
QPHRKPPIHN+KP
Sbjct: 127 QPHRKPPIHNQKP 129
BLAST of CsGy3G002700 vs. ExPASy TrEMBL
Match:
A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)
HSP 1 Score: 259 bits (661), Expect = 3.04e-87
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60
MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK
Sbjct: 1 MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60
Query: 61 NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH 120
NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH
Sbjct: 61 NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPH 120
Query: 121 RKPPIHNEKP 130
RKPPIHNEKP
Sbjct: 121 RKPPIHNEKP 130
BLAST of CsGy3G002700 vs. ExPASy TrEMBL
Match:
A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)
HSP 1 Score: 104 bits (260), Expect = 2.93e-26
Identity = 74/135 (54.81%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 1 MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFD 60
MA P ILL STLHACDA RL+ F+ SN VSR+ L + Q DQ +
Sbjct: 1 MATPSLLFILLL--STLHACDACHRLQLFEYSNPVSRLGLLAPIPQ---EFRTDQP---E 60
Query: 61 KNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKEK--VMNSKENEVGEDMVVMD 120
++ N NI+H + IGI +LKGMK+ RL MEF MKEK +M+ +ENEVGEDMVVMD
Sbjct: 61 RSLNKNIIHKVSSSVEIGIGILKGMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMD 120
Query: 121 YAQPHRKPPIHNEKP 130
YAQPHRKPPIHN+KP
Sbjct: 121 YAQPHRKPPIHNKKP 126
BLAST of CsGy3G002700 vs. ExPASy TrEMBL
Match:
A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 2.03e-22
Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 7 FLILLFFSSTLHACDASRLRFFQSSNFVS-RINELHSMSQGIWSINHDQEGSFDKNNNDN 66
FL LLF S+ LHACDA L+ SS S I+ M Q + S DK+ + N
Sbjct: 8 FLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQ--------LKRSLDKSKS-N 67
Query: 67 ILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE----------KVMNSKENEVGEDMVVMD 126
+ + EN+ GIE+LKGMK+ RL ME P+++ KV+NS+ENEVGEDMVVMD
Sbjct: 68 EVSSVENV-GIEILKGMKKL-RRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMD 127
Query: 127 YAQPHRKPPIHNEKP 130
YAQPHRKPPIHN KP
Sbjct: 128 YAQPHRKPPIHNRKP 131
BLAST of CsGy3G002700 vs. ExPASy TrEMBL
Match:
M1A0Y5 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 4.14e-09
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query: 84 RDGSRLVMEFPM----KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEK 129
R SRL++E P+ +E+ +NS E E+ ED+VVMDYAQPHRKPPIHN K
Sbjct: 5 RRESRLMLESPLSTQHEEEAVNSIEKELVEDVVVMDYAQPHRKPPIHNTK 54
BLAST of CsGy3G002700 vs. ExPASy TrEMBL
Match:
A0A6S7NRQ9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS30448 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 5.93e-09
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 0
Query: 16 TLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIG 75
++HACD+ L F ELH ++ I EG +N + + +KE+ +
Sbjct: 15 SMHACDSRHLGVFHKEPG----KELHLITSKAPVIRVGHEG---RNCKETNMEDKESKLE 74
Query: 76 -----IEMLKG------MKRDGS---------RLVMEFPMK---EKVMNSKENEVGEDMV 130
++M KG + +DG+ RL ME K EK+ NSK+N V ED+
Sbjct: 75 FPSEELKMRKGNDIELNLSQDGTKPQGWKNRARLTMESKQKDSKEKINNSKDNSVTEDVG 134
BLAST of CsGy3G002700 vs. TAIR 10
Match:
AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). )
HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0
Query: 106 EVGEDMVVMDYAQPHRKPPIHNEK 130
E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q93VK8 | 3.9e-05 | 83.33 | Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_011650407.1 | 6.27e-87 | 100.00 | uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical ... | [more] |
XP_038905997.1 | 1.31e-55 | 76.74 | uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida] | [more] |
XP_038905996.1 | 9.11e-54 | 76.15 | uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida] | [more] |
XP_022154042.1 | 6.05e-26 | 54.81 | uncharacterized protein LOC111021396 [Momordica charantia] | [more] |
XP_023540680.1 | 6.10e-24 | 48.87 | uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L298 | 3.04e-87 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1 | [more] |
A0A6J1DKL1 | 2.93e-26 | 54.81 | uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A6J1KZM9 | 2.03e-22 | 50.37 | uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521... | [more] |
M1A0Y5 | 4.14e-09 | 60.00 | Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | [more] |
A0A6S7NRQ9 | 5.93e-09 | 36.23 | Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS30448 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G16515.1 | 2.8e-06 | 83.33 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionall... | [more] |