CsGy2G000255 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G000255
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Photosystem II PsbX
Location	Gy14Chr2: 167970 .. 168338 (-)
RNA-Seq Expression	CsGy2G000255
Synteny	CsGy2G000255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACGGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACGGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACGGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

Protein sequence

MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVKRT*

Homology

[Close]

BLAST of CsGy2G000255 vs. NCBI nr
Match: XP_011648590.1 (uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical protein Csa_019271 [Cucumis sativus])

HSP 1 Score: 210 bits (534), Expect = 8.12e-68
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (529), Expect = 4.70e-67
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. NCBI nr
Match: XP_008459641.1 (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 204 bits (520), Expect = 1.11e-65
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 201 bits (510), Expect = 3.71e-64
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRAR AEAFAKPLPLRPSNKP+ SS+SSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKPLPLRPSNKPNASSNSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 190 bits (482), Expect = 6.87e-60
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 3.93e-68
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 2.27e-67
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL
Match: A0A1S3CAS0 (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 5.36e-66
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 3.33e-60
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 1.92e-59
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of CsGy2G000255 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-28
Identity = 69/122 (56.56%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+S+  P+         R+  F KPLPL+PS     +   + + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            G++A ALTASMV+PE+AEAAGSG+SPSLKNFLLSIA+GG+V+T I+G V+GV+NFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

The following BLAST results are available for this feature:

BLAST of CsGy2G000255 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G000255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648590.1	8.12e-68	100.00	uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical ...	[more]
KAA0061475.1	4.70e-67	99.18	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]
XP_008459641.1	1.11e-65	97.54	PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]	[more]
XP_038890010.1	3.71e-64	95.90	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
XP_022946746.1	6.87e-60	89.34	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]

BLAST of CsGy2G000255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL7	3.93e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]
A0A5A7V6L0	2.27e-67	99.18	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CAS0	5.36e-66	97.54	uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=...	[more]
A0A6J1G4H3	3.33e-60	89.34	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	1.92e-59	88.52	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]

BLAST of CsGy2G000255 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	3.1e-28	56.56	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 84..122 e-value: 4.7E-10 score: 41.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..48
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..122
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 85..122 e-value: 6.5E-16 score: 58.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000255.1	CsGy2G000255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding