CsGy1G018545 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G018545
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transmembrane protein
Location	Gy14Chr1: 16716558 .. 16716992 (-)
RNA-Seq Expression	CsGy1G018545
Synteny	CsGy1G018545

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGGTCTTCAAGCACTTCTCGGAGCTTTAATGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCATTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACCAGGTAAATTTTGATTATAGATCCATAATGTAACTCAATGCTGCTTTCTTCACCCAGCGAAAGCGAAGTAACTGTTGGATTGAAATAAAAATGTGCTTTTCAATTTTCTAGCTTTGAACCTGCGTTGGATTTTATGGTTTTCATGCAATCACAAGCTTGTTTGAAACGACCTTTTAAGAACTTTTCTAAAGACTAA

mRNA sequence

ATGTATAGGTCTTCAAGCACTTCTCGGAGCTTTAATGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCATTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACCAGCTTTGAACCTGCGTTGGATTTTATGGTTTTCATGCAATCACAAGCTTGTTTGAAACGACCTTTTAAGAACTTTTCTAAAGACTAA

Coding sequence (CDS)

ATGTATAGGTCTTCAAGCACTTCTCGGAGCTTTAATGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCATTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACCAGCTTTGAACCTGCGTTGGATTTTATGGTTTTCATGCAATCACAAGCTTGTTTGAAACGACCTTTTAAGAACTTTTCTAAAGACTAA

Protein sequence

MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENAVHLIPLTLFLCALILWVCSTSFEPALDFMVFMQSQACLKRPFKNFSKD*

Homology

[Close]

BLAST of CsGy1G018545 vs. NCBI nr
Match: KAE8653076.1 (hypothetical protein Csa_019861 [Cucumis sativus])

HSP 1 Score: 214 bits (545), Expect = 6.10e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
           MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA
Sbjct: 1   MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61  VHLIPLTLFLCALILWVCSTSFEPALDFMVFMQSQACLKRPFKNFSKD 108
           VHLIPLTLFLCALILWVCSTSFEPALDFMVFMQSQACLKRPFKNFSKD
Sbjct: 61  VHLIPLTLFLCALILWVCSTSFEPALDFMVFMQSQACLKRPFKNFSKD 108

[Close]

BLAST of CsGy1G018545 vs. NCBI nr
Match: KAA0046741.1 (hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK14518.1 hypothetical protein E5676_scaffold15G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 9.18e-44
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          MYRSSSTSRSF+EFSVDLLPDSISSPPLKNEAS VLPLFKSNSDAKKEMG QFKSPG NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLTLFLCALILWVCST 80
          VHLIPLTLFLCALILWVCST
Sbjct: 61 VHLIPLTLFLCALILWVCST 80

[Close]

BLAST of CsGy1G018545 vs. NCBI nr
Match: KAG6587911.1 (hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 3.46e-24
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEA-SGVLPLFKSNSDAKKEMGSQFKSPGEN 60
          M+RSSSTSR+F+E+SVD+ P   SSPPLKNEA   +LPLFK ++  KKEMG  FK PG+N
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDTP-KKEMGPHFKPPGQN 60

Query: 61 AVHLIPLTLFLCALILWVCST 80
          AVHLIPL L L ALILW+CS+
Sbjct: 61 AVHLIPLILLLSALILWICSS 80

[Close]

BLAST of CsGy1G018545 vs. NCBI nr
Match: KAG7021797.1 (hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 3.77e-24
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEA-SGVLPLFKSNSDAKKEMGSQFKSPGEN 60
          M+RSSSTSR+F+E+SVD+ P   SSPPLKNEA   +LPLFK ++  KKEMG  FK PG+N
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDTP-KKEMGPHFKPPGQN 60

Query: 61 AVHLIPLTLFLCALILWVCST 80
          AVHLIPL L L ALILW+CS+
Sbjct: 61 AVHLIPLILLLSALILWICSS 80

[Close]

BLAST of CsGy1G018545 vs. NCBI nr
Match: RVW47477.1 (hypothetical protein CK203_086512 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 1.55e-20
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          MYRS+STSR+ +EF V+LLP ++ S PLK  AS  LP++   SDA KKEM    KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCSTSFEP 84
          A+HLIPL L LCALILWV S    P
Sbjct: 61 AIHLIPLLLILCALILWVFSDPGNP 85

[Close]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL
Match: A0A0A0LTP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 9.74e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61 VHLIPLTLFLCALILWVCST 80
          VHLIPLTLFLCALILWVCST
Sbjct: 61 VHLIPLTLFLCALILWVCST 80

[Close]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL
Match: A0A5A7TZH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00330 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 4.45e-44
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          MYRSSSTSRSF+EFSVDLLPDSISSPPLKNEAS VLPLFKSNSDAKKEMG QFKSPG NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLTLFLCALILWVCST 80
          VHLIPLTLFLCALILWVCST
Sbjct: 61 VHLIPLTLFLCALILWVCST 80

[Close]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL
Match: A0A438EIF2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.50e-21
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          MYRS+STSR+ +EF V+LLP ++ S PLK  AS  LP++   SDA KKEM    KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCSTSFEP 84
          A+HLIPL L LCALILWV S    P
Sbjct: 61 AIHLIPLLLILCALILWVFSDPGNP 85

[Close]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL
Match: A0A6A1V842 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G010461 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.50e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          MYRSSSTSR+ +EF V+L+P  + SPP K  +S  LP++ S  DA KKE+    +SPGE 
Sbjct: 1  MYRSSSTSRASDEFLVNLVPAEMGSPPQKAASSDDLPIYNSFPDATKKEVAFPNRSPGEE 60

Query: 61 AVHLIPLTLFLCALILWVCSTS 81
           +HLIPL L LC LILW+ S S
Sbjct: 61 TIHLIPLVLVLCGLILWIFSDS 82

[Close]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL
Match: A0A7N2L1G1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.03e-17
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 3  RSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGENAV 62
          RSSSTSR+ +EF V+LLP ++ SPPLK   S  LP++ S SDA KK++    KS GENA+
Sbjct: 2  RSSSTSRASDEFLVNLLPPAMDSPPLKAATSNDLPMYNSISDATKKDIALYRKSSGENAI 61

Query: 63 HLIPLTLFLCALILWVCS 79
          H+IPL L LC  ILW+ S
Sbjct: 62 HIIPLVLILCVFILWIFS 79

[Close]

BLAST of CsGy1G018545 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   ++ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of CsGy1G018545 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   ++ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of CsGy1G018545 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   ++ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of CsGy1G018545 vs. TAIR 10
Match: AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLL--PDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGE 60
          M RS+S SR  + F       P S S   ++++   +LP +  NS A K   S+F+   E
Sbjct: 1  MRRSASGSRVLDHFPATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREKSRFRF-SE 60

Query: 61 NAVHLIPLTLFLCALILWVCSTS 82
          N +HLIPL L LC  ILW+ S S
Sbjct: 61 NVIHLIPLILLLCVAILWLSSYS 82

[Close]

BLAST of CsGy1G018545 vs. TAIR 10
Match: AT5G20045.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.8e-04
Identity = 32/85 (37.65%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEM---GSQFKSP- 60
          M R   +SR   EF ++L  DS S             L   +  AKKE+    + +KS  
Sbjct: 1  MQRLQISSRPSEEFLINLSVDSASPD----------GLVVYDDIAKKELSLHNNSYKSAN 60

Query: 61 GENAVHLIPLTLFLCALILWVCSTS 82
          GE A+HLIP+ LFLC  +LWV S++
Sbjct: 61 GERAIHLIPIVLFLCGFMLWVFSSA 75

The following BLAST results are available for this feature:

BLAST of CsGy1G018545 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G018545 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653076.1	6.10e-70	100.00	hypothetical protein Csa_019861 [Cucumis sativus]	[more]
KAA0046741.1	9.18e-44	95.00	hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK1451...	[more]
KAG6587911.1	3.46e-24	66.67	hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021797.1	3.77e-24	66.67	hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyro...	[more]
RVW47477.1	1.55e-20	60.00	hypothetical protein CK203_086512 [Vitis vinifera]	[more]

BLAST of CsGy1G018545 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTP3	9.74e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1	[more]
A0A5A7TZH0	4.45e-44	95.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438EIF2	7.50e-21	60.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1	[more]
A0A6A1V842	7.50e-18	54.88	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G010461 PE=4 SV=1	[more]
A0A7N2L1G1	2.03e-17	56.41	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CsGy1G018545 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35658.1	2.3e-06	39.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.2	2.3e-06	39.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	2.3e-06	39.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16840.1	5.1e-06	39.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G20045.1	2.8e-04	37.65	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..85
None	No IPR available	PANTHER	PTHR34189:SF10	TRANSMEMBRANE PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G018545.1	CsGy1G018545.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane