Cp4.1LG20g04990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g04990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG20: 2963617 .. 2965306 (+)
RNA-Seq ExpressionCp4.1LG20g04990
SyntenyCp4.1LG20g04990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTGAGGTTTTGGAAGCGGACGCATCCGCCTCCACGACTGGTTCATTAGCAAGCAGCAGCAACGAAGACGACGCCTCCAACTCGCTCTCTTTCATTCTCACATTCTGTCGCAGACTTTCCAACGATTCCTTCAATTTCAAAAGCTCGTCCAAATCCAGATCCTCGATTTTGATCGATTCTCCTCTCGATTTCATTTCCTTCTCCAGCATCTCTCCCTTCTTCTTCTCCAATTGTAATTGTTTAACCAGATCGATAAGTTCCTCATTCTCCTTCTCGAACATTCCTTCGCTCGCTGGCGGAATCGGCTCCGATTTGCGGTTTAGGTATCGATCGACGACGTCCTCGACGTTTGGATTGCCGAATGAGAACGCCTTGCCGCCAGGAGAGAAGACGATAATGGCGATCTCTAAACCGCACAGAGTAGCGAGATCGTTCGCTTTCTTGAAGAGACCGTTTCGGCGCTTGGAGAAGGTAACTTGTCTGGAGCCTCTATCCTTCACCATCTTCATCTCGATTTTTCGCCTCCCCATTGATAACGTACTTTATAGTCTTTCCACTGAAAAAATTAACCGATCAGAGATTGATTTCTGAGGAGATCTGCGATTCCGATCGAAAACCAGAGGTGTTTTCTTCAATGTTTCTAATATCGGATTTTAGTGTCTGTTTTATACATATTATTTTGTTCATTTTGTTTGCTAACATGGAAAGCTTTTAAATCTCTTTCTAAATTTGTCTGGTTGTTGGAAATTCGAGATTCCGATTATGTTCAAGGAGGTTAATGTCTCTGAAATTTCAGAATTCGATTTCACTCGCAAGAAATATATCTCTTTCATCTCTGATTGAATATAATTTCTCTTACATCATGGACTGAAAATAATATCACTGGTAAGAAATATCTCTCTCTTCTATCTCTGGAAGATGTCTCTGAAATAATTCTCTCTTTTTCTTCTTCTTATGGTTGTTTATATACATGAAATCGAAATGAAAATAGATGATTGCCATAGAATTAGTATGTCTTATTGAATTTTATTTACTTACTAATTTATTTTTTTGCTCTAATTTTTAAAATTTTACCGATCTATTTCAAATTTTGAATCTTCCTATACGATTAAAACCATGAAGAAGTCACAACGTAGTAGAGCAGAGACCAAACGAGGAAGAAGATTGATAAATTCATGTAGCGGCAATAACGAGCCCGACCAAACCAATAAGTCCACCGACGCGAGGAGCTACGCCTTCACAGAGGCAATGTAAATGGTGCGATGGTCTCTGGGTCAAGTTCCGATCATTCAGGTGTCAAAGCAAGCGGCATTGCGAAGGATAAGAGTGGGGGAGTCTAAATCTTTTGATTCTCGAAATGGGCCTCCCAAGCCATTTGCCTAGCTAAGGGGTGGGCCGTCAGCTTGATGTGGAAGTTGGTGCTTTTAGGAATCAGAACTGCTGTTCTTCGTGTGGCCATTATGCTACGCTTGAATAACACGACTCTTTACAATGGTATGATATTATCTACTTTCAGCATAAGCTCTCACATGGCTTTGCTTTGGGCTTCCCCAAAAAGTTTCCCAAAAGGCCTCGTACCAATAGAGAGAGTATTCTTTGATTATAAATCCATAATTATTCCTTACCTTAGCCAAGGTGGGACTTTCTGACCTCGTCATCCAATCAGTTACCATTGACCTCTCATCAT

mRNA sequence

CAAATTGAGGTTTTGGAAGCGGACGCATCCGCCTCCACGACTGGTTCATTAGCAAGCAGCAGCAACGAAGACGACGCCTCCAACTCGCTCTCTTTCATTCTCACATTCTGTCGCAGACTTTCCAACGATTCCTTCAATTTCAAAAGCTCGTCCAAATCCAGATCCTCGATTTTGATCGATTCTCCTCTCGATTTCATTTCCTTCTCCAGCATCTCTCCCTTCTTCTTCTCCAATTGTAATTGTTTAACCAGATCGATAAGTTCCTCATTCTCCTTCTCGAACATTCCTTCGCTCGCTGGCGGAATCGGCTCCGATTTGCGGTTTAGGTATCGATCGACGACGTCCTCGACGTTTGGATTGCCGAATGAGAACGCCTTGCCGCCAGGAGAGAAGACGATAATGGCGATCTCTAAACCGCACAGAGTAGCGAGATCGTTCGCTTTCTTGAAGAGACCGTTTCGGCGCTTGGAGAAGAAGTCACAACGTAGTAGAGCAGAGACCAAACGAGGAAGAAGATTGATAAATTCATGTAGCGGCAATAACGAGCCCGACCAAACCAATAAGTCCACCGACGCGAGGAGCTACGCCTTCACAGAGGCAATGTAAATGGTGCGATGGTCTCTGGGTCAAGTTCCGATCATTCAGGTGTCAAAGCAAGCGGCATTGCGAAGGATAAGAGTGGGGGAGTCTAAATCTTTTGATTCTCGAAATGGGCCTCCCAAGCCATTTGCCTAGCTAAGGGGTGGGCCGTCAGCTTGATGTGGAAGTTGGTGCTTTTAGGAATCAGAACTGCTGTTCTTCGTGTGGCCATTATGCTACGCTTGAATAACACGACTCTTTACAATGGTATGATATTATCTACTTTCAGCATAAGCTCTCACATGGCTTTGCTTTGGGCTTCCCCAAAAAGTTTCCCAAAAGGCCTCGTACCAATAGAGAGAGTATTCTTTGATTATAAATCCATAATTATTCCTTACCTTAGCCAAGGTGGGACTTTCTGACCTCGTCATCCAATCAGTTACCATTGACCTCTCATCAT

Coding sequence (CDS)

CAAATTGAGGTTTTGGAAGCGGACGCATCCGCCTCCACGACTGGTTCATTAGCAAGCAGCAGCAACGAAGACGACGCCTCCAACTCGCTCTCTTTCATTCTCACATTCTGTCGCAGACTTTCCAACGATTCCTTCAATTTCAAAAGCTCGTCCAAATCCAGATCCTCGATTTTGATCGATTCTCCTCTCGATTTCATTTCCTTCTCCAGCATCTCTCCCTTCTTCTTCTCCAATTGTAATTGTTTAACCAGATCGATAAGTTCCTCATTCTCCTTCTCGAACATTCCTTCGCTCGCTGGCGGAATCGGCTCCGATTTGCGGTTTAGGTATCGATCGACGACGTCCTCGACGTTTGGATTGCCGAATGAGAACGCCTTGCCGCCAGGAGAGAAGACGATAATGGCGATCTCTAAACCGCACAGAGTAGCGAGATCGTTCGCTTTCTTGAAGAGACCGTTTCGGCGCTTGGAGAAGAAGTCACAACGTAGTAGAGCAGAGACCAAACGAGGAAGAAGATTGATAAATTCATGTAGCGGCAATAACGAGCCCGACCAAACCAATAAGTCCACCGACGCGAGGAGCTACGCCTTCACAGAGGCAATGTAA

Protein sequence

QIEVLEADASASTTGSLASSSNEDDASNSLSFILTFCRRLSNDSFNFKSSSKSRSSILIDSPLDFISFSSISPFFFSNCNCLTRSISSSFSFSNIPSLAGGIGSDLRFRYRSTTSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLEKKSQRSRAETKRGRRLINSCSGNNEPDQTNKSTDARSYAFTEAM
Homology
[Close]
BLAST of Cp4.1LG20g04990 vs. NCBI nr
Match: ONK74532.1 (uncharacterized protein A4U43_C03F7340 [Asparagus officinalis] >ONK74565.1 uncharacterized protein A4U43_C03F7740 [Asparagus officinalis])

HSP 1 Score: 53.9 bits (128), Expect = 1.17e-05
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 111 RSTTSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLEK 158
           RS TS T GLP +  LP GE T  A S PHRV+RS A L+ PFRR EK
Sbjct: 27  RSATSFTPGLPRDYGLPTGELTTTATSAPHRVSRSAALLETPFRRFEK 74

[Close]
BLAST of Cp4.1LG20g04990 vs. NCBI nr
Match: BAU00824.1 (hypothetical protein VIGAN_10245600 [Vigna angularis var. angularis])

HSP 1 Score: 49.7 bits (117), Expect = 2.68e-04
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 114 TSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLE 157
           T ST G PNE AL  GEKT++AIS P  V  S AFLK P RR E
Sbjct: 2   TDSTCGWPNEKALSAGEKTMIAISTPQSVQSSLAFLKSPERRFE 45

[Close]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match: A0A5P1F8M7 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F7340 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.69e-06
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 111 RSTTSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLEK 158
           RS TS T GLP +  LP GE T  A S PHRV+RS A L+ PFRR EK
Sbjct: 27  RSATSFTPGLPRDYGLPTGELTTTATSAPHRVSRSAALLETPFRRFEK 74

[Close]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match: A0A0A9M463 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.47e-06
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 109 RYRSTTSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLEKKSQRS 163
           R RS   ST G P E ALP GEKT  A S PHR+  S AFL  P RRLEK + R+
Sbjct: 68  RKRSMRDSTEGWPKEKALPAGEKTTAATSAPHRMESSLAFLNSPARRLEKHTCRA 122

[Close]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match: A0A0S3T6H7 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G245600 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.30e-04
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 114 TSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLE 157
           T ST G PNE AL  GEKT++AIS P  V  S AFLK P RR E
Sbjct: 2   TDSTCGWPNEKALSAGEKTMIAISTPQSVQSSLAFLKSPERRFE 45

[Close]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match: A0A7J6FDV3 (Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=F8388_021473 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.84e-04
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 109 RYRSTTSSTFGLPNENALPPGEKTIMAISKPHRVARSFAFLKRPFRRLEK 158
           RY   TSST  LP E +L  GEKT+ A S P R+  S AFL RP RRLEK
Sbjct: 20  RYEPATSST--LPKEKSLLLGEKTMTATSAPQRIPSSAAFLNRPERRLEK 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g04990 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g04990 vs. NCBI nr
Match NameE-valueIdentityDescription
ONK74532.11.17e-0560.42uncharacterized protein A4U43_C03F7340 [Asparagus officinalis] >ONK74565.1 uncha... [more]
BAU00824.12.68e-0461.36hypothetical protein VIGAN_10245600 [Vigna angularis var. angularis][more]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5P1F8M75.69e-0660.42Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F7340 PE=4 ... [more]
A0A0A9M4637.47e-0656.36Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0S3T6H71.30e-0461.36Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G... [more]
A0A7J6FDV38.84e-0458.00Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=F8388_021473 PE... [more]
BLAST of Cp4.1LG20g04990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g04990.1Cp4.1LG20g04990.1mRNA