Cp4.1LG18g08630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g08630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Cp4.1LG18: 7994528 .. 7996143 (+)
RNA-Seq Expression	Cp4.1LG18g08630
Synteny	Cp4.1LG18g08630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCTTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTCTGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTGAGATTCCAGAGTTTGGTGAATTGAATGTTTTTTTTGTTTATGGATTTAGGGTTTAAGCTCTTAATCTGCTGCTTTTGAGGACTGTAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTTTGATCTTCAATTTCTTCATAAATTCAAACCTTATCTAACTTTCTCTTCTACACAGGATTCACCCATATTTCATTCCTACTTTTCAATGGAAAATTCAGAAGAGTTTAAATGAACTGTTTTTCATGAATCTTAGTCAGGGTCTGTATGGGTCTAGGAGTTACTTCTGACTGCTCTCTTTCCTGGCTAAGGCTGATCTTGTTCTCAGGATTTGCCATTGATTTGTTTTGAGGTTAAAGTTCCTATAAAGGAAGGCCATGTCCTTGTGTAAACCTATTGTCTGGGCTGTTACTAGAGTATCTCAAACATATCAATTGGTTCATTTTTCCTTTGGTTCAGCTGCCCCTTGATTTTTGCTTGCTTCTTAAAATTTTAATTGATTGTGTGGGTTTATAGGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGATTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGGCAGGTATGAAAATTGCAGTTTCTTTACAGCAAAATTGTTTTAGAATCCGAACTTGATAACACCCAGTTACTTGAATCTTGTCAACTGCTAACAAAACATTCTGGAATTTGAAATGTGCAGAGCGTAGATGGAAGGGCAATCAGAGTGAATGTCGCAGAGGAAAAACCAAGGCGCAATTTC

mRNA sequence

AAATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCTTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTCTGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGATTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGGCAGAGCGTAGATGGAAGGGCAATCAGAGTGAATGTCGCAGAGGAAAAACCAAGGCGCAATTTC

Coding sequence (CDS)

ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCTTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTCTGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGATTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGGCAGAGCGTAGATGGAAGGGCAATCAGAGTGAATGTCGCAGAGGAAAAACCAAGGCGCAATTTC

Protein sequence

MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF

Homology

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BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 4.2e-80
Identity = 187/339 (55.16%), Postives = 233/339 (68.73%), Query Frame = 0


Query: 1   MASSSATSILKPLSKAD---SCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           MASS  TS LKPL+ AD   S + S PS+ +        S      T   +L  S  S +
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSF-SRV 60

Query: 61  FSSSKKKTHL--SSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENES 120
             S K KTHL  S  V+ VAQ+S+W +E           G E        EN   S++ S
Sbjct: 61  SLSLKTKTHLKKSPFVSFVAQTSDWAEE-----------GGEGSVAVEETENSLESQDVS 120

Query: 121 RISDWEGE-GEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLA 180
              + EG+  EG+   G E E G V E    E     EP+E+AKL+VGNL+YDV+SQ LA
Sbjct: 121 EGDESEGDASEGDVSEGDESE-GDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALA 180

Query: 181 MLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAA 240
           MLFE+AGTVEIAEVIY+R++D+SRGFGFVTMSSV+EAE AV+ FNRY+  GR L VNKAA
Sbjct: 181 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA 240

Query: 241 ARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGF 300
            RGSRPER PR ++PAFR+YVGNL W+VD+ RLEQ+FSEHGKVV+ARV+YDR++GRSRGF
Sbjct: 241 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 300

Query: 301 GFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           GFVTM+D   +N+AI+ALDGQ+++GRAIRVNVAEE+P R
Sbjct: 301 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.3e-76
Identity = 181/337 (53.71%), Postives = 224/337 (66.47%), Query Frame = 0


Query: 3   SSSATSILKPLSKA-DSCLLSLPSLFTCRPPHSFLSFPSKFTTAP----FHLSSSHCSSL 62
           S +   I+KP S A +SCL+SLP LF         ++P    T       HLS ++ S  
Sbjct: 2   SCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTY-SPC 61

Query: 63  FSSSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRI 122
             S KKKT +S+L           +E++T+ +D +      G+E     N E S  E   
Sbjct: 62  ILSPKKKTSVSAL----------QEEENTLILDGQ------GQESGDLFNFEPSGEE--- 121

Query: 123 SDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 182
           ++ EG  E   D G   E        DEEE   +EP EDAKL+VGNL YDVDS+ LA LF
Sbjct: 122 TEEEGFVEAVGDAGESDE-----VEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLF 181

Query: 183 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 242
           E+AG VEIAEVIY+R +D+SRGFGFVTMS+VEEAEKAV+ +NRY+  GR L VNKAA RG
Sbjct: 182 EQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRG 241

Query: 243 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 302
            RPER PRTF+ ++RIYVGN+ W +D ARLEQ+FSEHGKVV ARV+YDR++GRSRGFGFV
Sbjct: 242 ERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFV 301

Query: 303 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRN 335
           TMA E  M+DAIA LDGQS+DGR IRVNVAE++ RRN
Sbjct: 302 TMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.4e-75
Identity = 165/319 (51.72%), Postives = 214/319 (67.08%), Query Frame = 0


Query: 17  DSCLLSLPSLFTCRPPHSFLSFPSKFT-TAPFHLSSSHCSSLFSSSKKKTHLSSLVASVA 76
           + CL+SLP  FT     S  S+P   T   P  LSSS   +L S +K+ T   + V+ ++
Sbjct: 4   NGCLISLPPFFT--TTKSISSYPFLSTQLKPISLSSS-LPTLLSLNKRTTQFPTFVSVLS 63

Query: 77  QSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGE 136
                 ++D+T+ +D +    E G + P +                              
Sbjct: 64  ------EDDNTLVLDDQ----EQGGDFPSF------------------------------ 123

Query: 137 GGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSD 196
              V E G+ EE   +EP+EDAKL+VGNL YD+DS+ LA LF++AG VEIAEVIY+R++D
Sbjct: 124 ---VGEAGETEE--YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETD 183

Query: 197 RSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYV 256
           RSRGFGFVTMS+VEEA+KAV+ +++Y+  GR L VNKAA RGSRPER PRTFQP +RIYV
Sbjct: 184 RSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYV 243

Query: 257 GNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ 316
           GN+ W++D ARLEQVFSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ
Sbjct: 244 GNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQ 274

Query: 317 SVDGRAIRVNVAEEKPRRN 335
           ++DGR IRVN AEE+PRRN
Sbjct: 304 TLDGRTIRVNAAEERPRRN 274

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 8.5e-73
Identity = 148/220 (67.27%), Postives = 178/220 (80.91%), Query Frame = 0


Query: 115 SRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEG-PLEEPNEDAKLYVGNLSYDVDSQKL 174
           S+ S+W  E EGE DG   G    V E  + E+G    EP E+AKL+VGNL YDVDSQ L
Sbjct: 71  SQTSNWAEEEEGE-DGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 130

Query: 175 AMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKA 234
           AMLFE+AGTVEI+EVIY+R +D+SRGFGFVTMS+VEEAEKAV+ FN +E  GR L VN+A
Sbjct: 131 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 190

Query: 235 AARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRG 294
           A RGSRPERQPR +  AFRIYVGNL W+VDS RLE++FSEHGKVVDARV+ DR++GRSRG
Sbjct: 191 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 250

Query: 295 FGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           FGFV M++E  +N AIAALDGQ+++GRAI+VNVAEE+ RR
Sbjct: 251 FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.6e-71
Identity = 155/263 (58.94%), Postives = 189/263 (71.86%), Query Frame = 0


Query: 74  VAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSE 133
           VAQ+SEW QE  T  +        +GE  P          E  +S W  E +  D+GG E
Sbjct: 2   VAQTSEWEQEGSTNAV-------LEGESDP----------EGAVS-WGSETQVSDEGGVE 61

Query: 134 GEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQ 193
           G  G              EP E+AKL+VGNL YDVDS+KLA +F+ AG VEIAEVIY+R+
Sbjct: 62  GGQG------------FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRE 121

Query: 194 SDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPR-TFQPAFR 253
           +DRSRGFGFVTMS+VEEAEKAV+  N Y+  GR L VNKAA RGS PER PR  F+P+ R
Sbjct: 122 TDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCR 181

Query: 254 IYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 313
           +YVGNL W+VD++RLEQ+FSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAAL
Sbjct: 182 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 233

Query: 314 DGQSVDGRAIRVNVAEEKPRRNF 336
           DGQ++DGRA+RVNVAEE+PRR F
Sbjct: 242 DGQTLDGRAVRVNVAEERPRRAF 233

[Close]

BLAST of Cp4.1LG18g08630 vs. NCBI nr
Match: XP_023515898.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 643 bits (1659), Expect = 2.78e-232
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. NCBI nr
Match: XP_022921514.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 639 bits (1647), Expect = 1.88e-230
Identity = 333/335 (99.40%), Postives = 333/335 (99.40%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGR LVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRPLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. NCBI nr
Match: XP_022987125.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 639 bits (1647), Expect = 1.88e-230
Identity = 333/335 (99.40%), Postives = 333/335 (99.40%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHL SLVASVAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. NCBI nr
Match: KAG7023089.1 (31 kDa ribonucleoprotein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 636 bits (1641), Expect = 1.54e-229
Identity = 332/335 (99.10%), Postives = 332/335 (99.10%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLF CRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVA VAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. NCBI nr
Match: KAG6589409.1 (31 kDa ribonucleoprotein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 632 bits (1631), Expect = 5.15e-228
Identity = 330/335 (98.51%), Postives = 330/335 (98.51%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLF CRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKK HLSSLVA VAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKPHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYD DSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDADSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL
Match: A0A6J1JFY1 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484771 PE=4 SV=1)

HSP 1 Score: 639 bits (1647), Expect = 9.08e-231
Identity = 333/335 (99.40%), Postives = 333/335 (99.40%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHL SLVASVAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL
Match: A0A6J1E0P7 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429756 PE=4 SV=1)

HSP 1 Score: 639 bits (1647), Expect = 9.08e-231
Identity = 333/335 (99.40%), Postives = 333/335 (99.40%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGR LVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRPLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 509 bits (1312), Expect = 1.01e-179
Identity = 277/341 (81.23%), Postives = 301/341 (88.27%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MAS+SATSILKPLSKADSCLLSLPS+FTCRPPHSFLSFPSK     FHLSSS  SS FS 
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIR--FHLSSSSHSSPFSL 60

Query: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDED--GEEGPHWENQELSENESRIS 120
           SKKK H SSLV+ VAQ+S+W QEDDTITIDPKLGGDE+   E+GPHWENQELSE ESRIS
Sbjct: 61  SKKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRIS 120

Query: 121 DWEGEGEGEDDGGSEGEG----GGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLA 180
           DWEGE E   DGGSE EG    GG+LE  +EEEG  EEPNEDAKL+VGNL YDVDSQKLA
Sbjct: 121 DWEGEAE---DGGSEAEGEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLA 180

Query: 181 MLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAA 240
           M+F KAGTVEIAEVIY+R++D+SRGFGFVTMS+VEEAEKAVDTFNRYE  GR L VNKAA
Sbjct: 181 MIFGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAA 240

Query: 241 ARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGF 300
            RG+RPER PRTFQ +FRIYVGNL W+VD+ARLEQVFSEHGKVV+ARVLYDRD+GRSRGF
Sbjct: 241 PRGARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGF 300

Query: 301 GFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           GFVTMADETGMNDAIAALDGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 GFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL
Match: A0A5A7USX4 (Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00900 PE=4 SV=1)

HSP 1 Score: 495 bits (1275), Expect = 3.61e-174
Identity = 271/338 (80.18%), Postives = 293/338 (86.69%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60
           MAS+SATS+ K LSK DSC LSLPSLFT RPPH+FLSFPSKF   PFHLSSS   SS F 
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFI--PFHLSSSSSHSSCFY 60

Query: 61  SSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEE--GPHWENQELSENESRI 120
            SKKK HL     SVAQ+S+W QEDDT+TIDPKL  DED EE  GPHWEN+ELSE ESRI
Sbjct: 61  PSKKKPHL----PSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRI 120

Query: 121 SDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
           SDWEGEGEGED GGSE E GG  E  + E+GP EEPNEDAKL+VGNL YD+DS+KLAMLF
Sbjct: 121 SDWEGEGEGED-GGSEAEVGGDEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
           EKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRYE  GR L VNKAA RG
Sbjct: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRG 240

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +R ERQPR FQPAFRIYVGNL W+VD+ARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV
Sbjct: 241 TRQERQPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           TMADETGMNDAIAALDGQS++GRAIRVNVAEE+PRRNF
Sbjct: 301 TMADETGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 331

[Close]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL
Match: A0A5D3BIH5 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00930 PE=4 SV=1)

HSP 1 Score: 492 bits (1267), Expect = 5.75e-173
Identity = 271/339 (79.94%), Postives = 293/339 (86.43%), Query Frame = 0


Query: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60
           MAS+SATS+ KPLSK DSC LSLPSLFT RPPH+FLSFPSKF   PFHLSSS   SS F 
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFI--PFHLSSSSSHSSCFY 60

Query: 61  SSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEE--GPHWENQELSENESRI 120
            SKKK HL     SVAQ+S+W QEDDT+TIDPKL  DED EE  GPHWEN+ELSE ESRI
Sbjct: 61  PSKKKPHL----PSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRI 120

Query: 121 SDWEGEGEGEDDGGSEGEGGGVLELGDE-EEGPLEEPNEDAKLYVGNLSYDVDSQKLAML 180
           SDWEGEGE   DGGSE E GG  E  +E E+GP EEPNEDAKL+VGNL YD+DS+KLAML
Sbjct: 121 SDWEGEGE---DGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAML 180

Query: 181 FEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAAR 240
           FEKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRYE  GR L VNKAA R
Sbjct: 181 FEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPR 240

Query: 241 GSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 300
           G+R ERQPR FQPAFRIYVGNL W+VD+ARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF
Sbjct: 241 GTRQERQPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
           VTMADETGMNDAIAALDGQS++GRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 330

[Close]

BLAST of Cp4.1LG18g08630 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-81
Identity = 187/339 (55.16%), Postives = 233/339 (68.73%), Query Frame = 0


Query: 1   MASSSATSILKPLSKAD---SCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           MASS  TS LKPL+ AD   S + S PS+ +        S      T   +L  S  S +
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSF-SRV 60

Query: 61  FSSSKKKTHL--SSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENES 120
             S K KTHL  S  V+ VAQ+S+W +E           G E        EN   S++ S
Sbjct: 61  SLSLKTKTHLKKSPFVSFVAQTSDWAEE-----------GGEGSVAVEETENSLESQDVS 120

Query: 121 RISDWEGE-GEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLA 180
              + EG+  EG+   G E E G V E    E     EP+E+AKL+VGNL+YDV+SQ LA
Sbjct: 121 EGDESEGDASEGDVSEGDESE-GDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALA 180

Query: 181 MLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAA 240
           MLFE+AGTVEIAEVIY+R++D+SRGFGFVTMSSV+EAE AV+ FNRY+  GR L VNKAA
Sbjct: 181 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA 240

Query: 241 ARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGF 300
            RGSRPER PR ++PAFR+YVGNL W+VD+ RLEQ+FSEHGKVV+ARV+YDR++GRSRGF
Sbjct: 241 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 300

Query: 301 GFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           GFVTM+D   +N+AI+ALDGQ+++GRAIRVNVAEE+P R
Sbjct: 301 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of Cp4.1LG18g08630 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 275.4 bits (703), Expect = 6.0e-74
Identity = 148/220 (67.27%), Postives = 178/220 (80.91%), Query Frame = 0


Query: 115 SRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEG-PLEEPNEDAKLYVGNLSYDVDSQKL 174
           S+ S+W  E EGE DG   G    V E  + E+G    EP E+AKL+VGNL YDVDSQ L
Sbjct: 71  SQTSNWAEEEEGE-DGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 130

Query: 175 AMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKA 234
           AMLFE+AGTVEI+EVIY+R +D+SRGFGFVTMS+VEEAEKAV+ FN +E  GR L VN+A
Sbjct: 131 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 190

Query: 235 AARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRG 294
           A RGSRPERQPR +  AFRIYVGNL W+VDS RLE++FSEHGKVVDARV+ DR++GRSRG
Sbjct: 191 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 250

Query: 295 FGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           FGFV M++E  +N AIAALDGQ+++GRAI+VNVAEE+ RR
Sbjct: 251 FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of Cp4.1LG18g08630 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-47
Identity = 102/197 (51.78%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 156 DAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAV 215
           D KL+VGNL ++VDS +LA LFE AG VE+ EVIYD+ + RSRGFGFVTMSSV E E A 
Sbjct: 90  DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149

Query: 216 DTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAF-------------------RIYVG 275
             FN YE  GR L VN       R +   R  + +F                   R+YVG
Sbjct: 150 QQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVG 209

Query: 276 NLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQS 334
           NL+W VD   LE +FSE GKVV+ARV+YDRDSGRS+GFGFVT      + +AI +LDG  
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269

[Close]

BLAST of Cp4.1LG18g08630 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-40
Identity = 112/282 (39.72%), Postives = 143/282 (50.71%), Query Frame = 0


Query: 118 SDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEP--NEDAKLYVGNLSYDVDSQKLAM 177
           SD+E E   EDD  ++G          ++  P+E    + D KL+VGNLS++VDS +LA 
Sbjct: 71  SDFEVE---EDDMFADG----------DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 130

Query: 178 LFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAA 237
           LFE AG VE+ EVIYD+ + RSRGFGFVTMS+  E E A   FN YEF GR L VN    
Sbjct: 131 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 190

Query: 238 RGSRPE---RQPRT---------------------------------------------- 297
              R E   R PR+                                              
Sbjct: 191 PPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGG 250

Query: 298 ---------------FQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRS 334
                               R+YVGNL+W VD   LE +F+E GKVV+ARV+YDRDSGRS
Sbjct: 251 SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 310

[Close]

BLAST of Cp4.1LG18g08630 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-40
Identity = 112/282 (39.72%), Postives = 143/282 (50.71%), Query Frame = 0


Query: 118 SDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEP--NEDAKLYVGNLSYDVDSQKLAM 177
           SD+E E   EDD  ++G          ++  P+E    + D KL+VGNLS++VDS +LA 
Sbjct: 71  SDFEVE---EDDMFADG----------DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 130

Query: 178 LFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAA 237
           LFE AG VE+ EVIYD+ + RSRGFGFVTMS+  E E A   FN YEF GR L VN    
Sbjct: 131 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 190

Query: 238 RGSRPE---RQPRT---------------------------------------------- 297
              R E   R PR+                                              
Sbjct: 191 PPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGG 250

Query: 298 ---------------FQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRS 334
                               R+YVGNL+W VD   LE +F+E GKVV+ARV+YDRDSGRS
Sbjct: 251 SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 310

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g08630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	4.2e-80	55.16	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19683	1.3e-76	53.71	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	2.4e-75	51.72	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	8.5e-73	67.27	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P28644	1.6e-71	58.94	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of Cp4.1LG18g08630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515898.1	2.78e-232	100.00	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921514.1	1.88e-230	99.40	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]	[more]
XP_022987125.1	1.88e-230	99.40	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita maxima]	[more]
KAG7023089.1	1.54e-229	99.10	31 kDa ribonucleoprotein, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
KAG6589409.1	5.15e-228	98.51	31 kDa ribonucleoprotein, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Cp4.1LG18g08630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JFY1	9.08e-231	99.40	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1E0P7	9.08e-231	99.40	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1C316	1.01e-179	81.23	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7USX4	3.61e-174	80.18	Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A5D3BIH5	5.75e-173	79.94	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Cp4.1LG18g08630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	3.0e-81	55.16	31-kDa RNA binding protein	[more]
AT5G50250.1	6.0e-74	67.27	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	3.7e-47	51.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	5.7e-40	39.72	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	5.7e-40	39.72	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 158..231 e-value: 2.2E-25 score: 100.3 coord: 252..325 e-value: 2.8E-27 score: 106.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 253..323 e-value: 2.2E-19 score: 69.0 coord: 159..228 e-value: 1.6E-19 score: 69.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 251..329 score: 19.399549
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..235 score: 17.983952
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 92..240 e-value: 7.3E-27 score: 96.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 241..335 e-value: 5.0E-28 score: 99.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..152
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..334
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..334
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 252..328 e-value: 1.36743E-32 score: 114.248
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 158..233 e-value: 3.52623E-34 score: 118.485
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 153..246
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 245..333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g08630.1	Cp4.1LG18g08630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding