Cp4.1LG18g07320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g07320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG18: 7141661 .. 7142107 (-)
RNA-Seq ExpressionCp4.1LG18g07320
SyntenyCp4.1LG18g07320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAAGAGGCAAACACTCGAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCAAAGTCAAGAATCTGTCAATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGCCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGATGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCAATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCATGTGTTTCATTTCATCTCTGATTATTGTTAA

mRNA sequence

ATGGCCAAAACAAGAGGCAAACACTCGAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCAAAGTCAAGAATCTGTCAATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGCCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGATGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCAATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCATGTGTTTCATTTCATCTCTGATTATTGTTAA

Coding sequence (CDS)

ATGGCCAAAACAAGAGGCAAACACTCGAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCAAAGTCAAGAATCTGTCAATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGCCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGATGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCAATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCATGTGTTTCATTTCATCTCTGATTATTGTTAA

Protein sequence

MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRKFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQGRPPNPKVAYHRSRLNEWHPHVFHFISDYC
Homology
BLAST of Cp4.1LG18g07320 vs. NCBI nr
Match: KAG6589576.1 (hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292 bits (748), Expect = 1.25e-99
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0

Query: 1   MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRKF 60
           MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAK SKEGMGFFIRRTLPRKF
Sbjct: 1   MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAKVSKEGMGFFIRRTLPRKF 60

Query: 61  GISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQGR 120
           GISFTIPDRMATEINDK RISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQGR
Sbjct: 61  GISFTIPDRMATEINDKKRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQGR 120

Query: 121 PPNPKVAYHRSRLNEWHPHVFHFISDYC 148
           PPNPK AYHRSRLNEWHP VFHFISDYC
Sbjct: 121 PPNPKAAYHRSRLNEWHPQVFHFISDYC 148

BLAST of Cp4.1LG18g07320 vs. NCBI nr
Match: KGN63749.1 (hypothetical protein Csa_013996 [Cucumis sativus])

HSP 1 Score: 200 bits (508), Expect = 6.13e-63
Identity = 109/150 (72.67%), Postives = 122/150 (81.33%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRK 60
           MAKTR K+ K K R +AR IAK+F+V+N + RQKL LTEK  + SKE M   +R     K
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERME--VRALHEIK 60

Query: 61  FGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRMATEI+DK RISGLHPLRITRVP GGPMEFH +VKEAEKGSAPLKNQQ+G
Sbjct: 61  FGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPHVFHFISD-YC 148
           +PPNPK AYHRS LNEWHP VFHFIS+ YC
Sbjct: 121 KPPNPKAAYHRSCLNEWHPQVFHFISNSYC 147

BLAST of Cp4.1LG18g07320 vs. NCBI nr
Match: TYK28377.1 (hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (463), Expect = 2.50e-56
Identity = 102/148 (68.92%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPR- 60
           MAKTR K++K K R QAR IAKQF+V          L EK  +ASKE M     RTL + 
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRV----------LKEKLEEASKERMEV---RTLHKI 60

Query: 61  KFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQ 120
           KFGISFTIPDRMATEINDK  ISGL PLRITRVP GGPMEFH +VKEAEKGSAPLKN ++
Sbjct: 61  KFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKK 120

Query: 121 GRPPNPKVAYHRSRLNEWHPHVFHFISD 146
           G+PPNPK AYHRS  NEWHP VFHFIS+
Sbjct: 121 GKPPNPKTAYHRSCFNEWHPQVFHFISN 135

BLAST of Cp4.1LG18g07320 vs. NCBI nr
Match: KAA0058005.1 (hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 4.12e-55
Identity = 98/147 (66.67%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRK 60
           MAKTR K++K K R QAR IAK+F+V          L EK  +ASKE M   +R     K
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRV----------LKEKLEEASKERME--VRTVHQIK 60

Query: 61  FGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRM TEINDK  ISGL PLRITRVP GGPMEFH +VKEAEKGSAPLKN ++G
Sbjct: 61  FGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPHVFHFISD 146
           +PPNPK AYHRS  NEWHP VFHFIS+
Sbjct: 121 KPPNPKTAYHRSCFNEWHPQVFHFISN 135

BLAST of Cp4.1LG18g07320 vs. NCBI nr
Match: PON36990.1 (hypothetical protein PanWU01x14_323790 [Parasponia andersonii])

HSP 1 Score: 124 bits (310), Expect = 1.68e-33
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           M F   R  P+KFGISF +PDR+A EI+DK  I G HP+RITR+PSGGP EFH VV+EAE
Sbjct: 1   MDFCALRAQPKKFGISFIVPDRLAVEISDKKTIVGNHPMRITRIPSGGPTEFHRVVEEAE 60

Query: 108 KGSAPLKNQQQG---RPPNPKVAYHRSRLNEWHPHVFH 142
           K S PLK   +      PNPK AYHRS +N+WHP VF+
Sbjct: 61  KESRPLKKYNENVMATRPNPKKAYHRSHMNDWHPKVFY 98

BLAST of Cp4.1LG18g07320 vs. ExPASy TrEMBL
Match: A0A0A0LRV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 2.97e-63
Identity = 109/150 (72.67%), Postives = 122/150 (81.33%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRK 60
           MAKTR K+ K K R +AR IAK+F+V+N + RQKL LTEK  + SKE M   +R     K
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERME--VRALHEIK 60

Query: 61  FGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRMATEI+DK RISGLHPLRITRVP GGPMEFH +VKEAEKGSAPLKNQQ+G
Sbjct: 61  FGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPHVFHFISD-YC 148
           +PPNPK AYHRS LNEWHP VFHFIS+ YC
Sbjct: 121 KPPNPKAAYHRSCLNEWHPQVFHFISNSYC 147

BLAST of Cp4.1LG18g07320 vs. ExPASy TrEMBL
Match: A0A5D3DX07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00030 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.21e-56
Identity = 102/148 (68.92%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPR- 60
           MAKTR K++K K R QAR IAKQF+V          L EK  +ASKE M     RTL + 
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRV----------LKEKLEEASKERMEV---RTLHKI 60

Query: 61  KFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQ 120
           KFGISFTIPDRMATEINDK  ISGL PLRITRVP GGPMEFH +VKEAEKGSAPLKN ++
Sbjct: 61  KFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKK 120

Query: 121 GRPPNPKVAYHRSRLNEWHPHVFHFISD 146
           G+PPNPK AYHRS  NEWHP VFHFIS+
Sbjct: 121 GKPPNPKTAYHRSCFNEWHPQVFHFISN 135

BLAST of Cp4.1LG18g07320 vs. ExPASy TrEMBL
Match: A0A5A7UWL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003090 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 2.00e-55
Identity = 98/147 (66.67%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFKVKNLSIRQKLGLTEKPAKASKEGMGFFIRRTLPRK 60
           MAKTR K++K K R QAR IAK+F+V          L EK  +ASKE M   +R     K
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRV----------LKEKLEEASKERME--VRTVHQIK 60

Query: 61  FGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRM TEINDK  ISGL PLRITRVP GGPMEFH +VKEAEKGSAPLKN ++G
Sbjct: 61  FGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPHVFHFISD 146
           +PPNPK AYHRS  NEWHP VFHFIS+
Sbjct: 121 KPPNPKTAYHRSCFNEWHPQVFHFISN 135

BLAST of Cp4.1LG18g07320 vs. ExPASy TrEMBL
Match: A0A2P5AKC8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 8.15e-34
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           M F   R  P+KFGISF +PDR+A EI+DK  I G HP+RITR+PSGGP EFH VV+EAE
Sbjct: 1   MDFCALRAQPKKFGISFIVPDRLAVEISDKKTIVGNHPMRITRIPSGGPTEFHRVVEEAE 60

Query: 108 KGSAPLKNQQQG---RPPNPKVAYHRSRLNEWHPHVFH 142
           K S PLK   +      PNPK AYHRS +N+WHP VF+
Sbjct: 61  KESRPLKKYNENVMATRPNPKKAYHRSHMNDWHPKVFY 98

BLAST of Cp4.1LG18g07320 vs. ExPASy TrEMBL
Match: A0A2P5F4J0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 4.67e-33
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKMRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           M F   R  P+KFGISF +PDR+A EI+DK  I G HP+RITR+P GGP EFH VV+EAE
Sbjct: 1   MDFCALRAQPKKFGISFIVPDRLAVEISDKKTIVGKHPMRITRIPLGGPTEFHRVVEEAE 60

Query: 108 KGSAPLKNQQQG---RPPNPKVAYHRSRLNEWHPHVFH 142
           K S PLK   +      PNPK AYHRS +N+WHP VF+
Sbjct: 61  KESRPLKKYHENVMATGPNPKKAYHRSHMNDWHPKVFY 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589576.11.25e-9997.30hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63749.16.13e-6372.67hypothetical protein Csa_013996 [Cucumis sativus][more]
TYK28377.12.50e-5668.92hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa][more]
KAA0058005.14.12e-5566.67hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa][more]
PON36990.11.68e-3360.20hypothetical protein PanWU01x14_323790 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
A0A0A0LRV92.97e-6372.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1[more]
A0A5D3DX071.21e-5668.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UWL12.00e-5566.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2P5AKC88.15e-3460.20Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE... [more]
A0A2P5F4J04.67e-3359.18Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g07320.1Cp4.1LG18g07320.1mRNA