Cp4.1LG17g10760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g10760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG17: 8225229 .. 8227085 (+)
RNA-Seq Expression	Cp4.1LG17g10760
Synteny	Cp4.1LG17g10760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATAATTGAGTAATAGCTATATTCTTTGCCCGCCCCCTTGAACTAGAATTAGGGTTTGTGAAGGGGTTTCAGCTTCGCTACACTCAGGAAGGCGCCTACTCTGTTCTTCACGGAAAATGGTACTGATTCCTAATTTCACTGGATTTTCTTTGTGTTTTCTCTGCTTGTAATCATTTGAACATAGTAGAATTAAGGATTTTTCCCTATTTGTTATCATTTTAATGGTAGGTTAAGTTAAATAAATTTCAATTTACTTCTGTTTGGACTGAAATTTGATGAATAAGGTCAAGGAATTTTCATCAGTTGCATGATTCTGCTCTGTTTTGTTGAGTGTATCTTATTTATTCATATCGTTGTTGGAAGATTCTGTTGTTTTACCTTCGCATTCTCATAGATGAAGTGTTTACTTTTTAATTTTTGTAATATTCGTTCCGATCCATTCCTTTTCGTTCTTTATTAGTTTTGTAGGTTGGATCATTTGACTTGTGCAATTGAAAGGGCATCAGATCTCAAACTTACTTAACGAATTAACGAACGCAATTATGTTGTATGCTATATATCTATTCGTCAATTTCTTTGTGAGAGTACACGTGAAGATTTCTAGTTCTTTGGAAGAATATTAATGAAACATAGATTTCTTTTGTAGAGTACATGTAAAAATTTCAACTTGTGTTCTTTGTACTGAAACTTGATAATGTGGTGAAGGAAATTGTTATTGGCTTCAAGTCTCAGCTTTGATTTTTAGTCATCTGGATTTTACATTAACTTTTAGTGTTATGGGTTGGGTTTAGAGGTATAGGTGTTCTTGAAGCTTTTTTGGCTAAGGTTTAGAGGTATTCAAGTAATTATTTGAGATTCTGGGACTGTTGGGTGGCCTCACTCATTTGCAAATCTTAATTTTGTGTTATGTTATGATCGATTCTTACTCTTTTTATTCCATAATTCATTGTGCAGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTAACTTTTTGAACCACTACAGTTGCAATTACTTAAAACAATTTCATGCACATAATTATCAGTACATTAGAATGGTTTAAATTCATATCATAAGGTATTTATGTCTGACCATAATTCGGAACCCGAAGACCAAGATCACATATAGGTGCTTCTATCATTTGCTGTTGTCGTCATTAATCTCCTAAATACATTTCTCATTTCACTTATCCTCCGCATCGTCGTTATCTCACCGATCTCTTCAAAAATTCTGTTATTAGTCTTGTATTTACCCCTCACTAATCCACGTCTCTGTAAATACTTTTGCGTATTTCCTGATAACTTTCTTGGATTCTGTAACGACCCTAGATTTTATATTGTTTTCAAGAAATTCATGAGTTCAATAAGTTGTCCATTGAATCTACTCTACTCACCAAAGCCTTTGTTTTGTGATCCTAACATGATTACTGAGACCTGACATTTATTTTACTGATTGTTGATCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTGGGTTAGAGCCTGACAGCAAGAAGAGGACCAAAGTTTTTGTTTTAGTTGAAGTTTTTTTTGTCCAAGTATTAGGGAAATACATACATTTGAAAGTGGATTGAGTTTATTATGTGATTCCCAGTTGATGTTTCAGTAAAATTATGTACTCTTGATGTGATTCCCAGTTTTGGTTCCACCAAACAGCTTCAAAAAATCTGCCT

mRNA sequence

ATGAACATAATTGAGTAATAGCTATATTCTTTGCCCGCCCCCTTGAACTAGAATTAGGGTTTGTGAAGGGGTTTCAGCTTCGCTACACTCAGGAAGGCGCCTACTCTGTTCTTCACGGAAAATGGTACTGATTCCTAATTTCACTGGATTTTCTTTGTGTTTTCTCTGCTTGTAATCATTTGAACATAGTAGAATTAAGGATTTTTCCCTATTTGTTATCATTTTAATGGTAGGTTAAGTTAAATAAATTTCAATTTACTTCTGTTTGGACTGAAATTTGATGAATAAGGTCAAGGAATTTTCATCAGTTGCATGATTCTGCTCTGTTTTGTTGAGTGTATCTTATTTATTCATATCGTTGTTGGAAGATTCTGTTGTTTTACCTTCGCATTCTCATAGATGAAGTGTTTACTTTTTAATTTTTGTAATATTCGTTCCGATCCATTCCTTTTCGTTCTTTATTAGTTTTGTAGGTTGGATCATTTGACTTGTGCAATTGAAAGGGCATCAGATCTCAAACTTACTTAACGAATTAACGAACGCAATTATGTTGTATGCTATATATCTATTCGTCAATTTCTTTGTGAGAGTACACGTGAAGATTTCTAGTTCTTTGGAAGAATATTAATGAAACATAGATTTCTTTTGTAGAGTACATGTAAAAATTTCAACTTGTGTTCTTTGTACTGAAACTTGATAATGTGGTGAAGGAAATTGTTATTGGCTTCAAGTCTCAGCTTTGATTTTTAGTCATCTGGATTTTACATTAACTTTTAGTGTTATGGGTTGGGTTTAGAGGTATAGGTGTTCTTGAAGCTTTTTTGGCTAAGGTTTAGAGGTATTCAAGTAATTATTTGAGATTCTGGGACTGTTGGGTGGCCTCACTCATTTGCAAATCTTAATTTTGTGTTATGTTATGATCGATTCTTACTCTTTTTATTCCATAATTCATTGTGCAGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTGGGTTAGAGCCTGACAGCAAGAAGAGGACCAAAGTTTTTGTTTTAGTTGAAGTTTTTTTTGTCCAAGTATTAGGGAAATACATACATTTGAAAGTGGATTGAGTTTATTATGTGATTCCCAGTTGATGTTTCAGTAAAATTATGTACTCTTGATGTGATTCCCAGTTTTGGTTCCACCAAACAGCTTCAAAAAATCTGCCT

Coding sequence (CDS)

ATGCTCCAAGTATCTTTATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTGGGTTAGAGCCTGA

Protein sequence

MLQVSLYSLCFRLREGRKVEAVSSTRFECARSVKICWVRA

Homology

[Close]

BLAST of Cp4.1LG17g10760 vs. ExPASy TrEMBL
Match: A0A0A0K2Z5 (60S ribosomal protein L38 OS=Cucumis sativus OX=3659 GN=Csa_7G089210 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.52e-04
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 6  LYSLCFRLREGRKVEAVSSTRFECARSVK 34
          LY+L FRL EGR+VEA+ STRFEC RSV+
Sbjct: 42 LYTLSFRLLEGRQVEAIPSTRFECTRSVE 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10760 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10760 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2Z5	2.52e-04	72.41	60S ribosomal protein L38 OS=Cucumis sativus OX=3659 GN=Csa_7G089210 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g10760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10760.1	Cp4.1LG17g10760.1	mRNA